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2
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1.4k
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Answer: A: diffBind: differentially bound sites are highly different between using EDGER an
5.6 years ago Rory Stark ★ 5.2k
0
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0
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1.2k
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Answer: A: diffbind change conditions dinamically
5.6 years ago Rory Stark ★ 5.2k
0
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0
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784
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Answer: A: Error in DBA_OLAP_RATE
5.7 years ago Rory Stark ★ 5.2k
1
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1
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1.4k
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Answer: A: DiffBind returns empty consensus peakset
5.7 years ago Rory Stark ★ 5.2k
0
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1
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3.7k
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Answer: A: Reading peaks from MACS2 with DiffBind
5.7 years ago Rory Stark ★ 5.2k
2
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1
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3.2k
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Answer: A: DiffBind's MA plots for ChIP-seq - how to properly interpret normalization from
5.7 years ago Rory Stark ★ 5.2k
0
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2
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1.2k
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Answer: A: Diffbind affinity based analysis
5.7 years ago Rory Stark ★ 5.2k
2
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1
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2.5k
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Answer: A: Can I input peak files from Genrich as input reads in DiffBind?
5.9 years ago Rory Stark ★ 5.2k
0
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1
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2.5k
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Comment: C: How to produce the fraction of reads in peaks (FRiP) using DiffBind
5.9 years ago Rory Stark ★ 5.2k
1
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0
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1.7k
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Answer: A: Using DiffBind with only a counts table?
5.9 years ago Rory Stark ★ 5.2k
0
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1
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2.5k
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Answer: A: How to produce the fraction of reads in peaks (FRiP) using DiffBind
5.9 years ago Rory Stark ★ 5.2k
0
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0
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2.0k
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Answer: A: DiffBind peaks input file format
5.9 years ago Rory Stark ★ 5.2k
0
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0
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2.0k
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Answer: A: DiffBind with highly variable FRiP (Fraction Reads in Peaks)
5.9 years ago Rory Stark ★ 5.2k
0
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0
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1.5k
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Answer: A: DiffBind - Counting reads - counts not found
5.9 years ago Rory Stark ★ 5.2k
0
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0
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782
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Answer: A: Diffbind plotting options
5.9 years ago Rory Stark ★ 5.2k
0
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0
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2.0k
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Answer: A: Handing duplicates in DiffBind
5.9 years ago Rory Stark ★ 5.2k
1
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0
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1.7k
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Answer: A: how to retrieve binding affinity matrix in diffbind
6.0 years ago Rory Stark ★ 5.2k
2
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1
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2.6k
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Answer: A: DiffBind for ATAC-seq -- bFullLibrarySize parameter
6.0 years ago Rory Stark ★ 5.2k
0
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0
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667
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Answer: A: Using up- and down-regulated genes in a signature with SigCheck
6.0 years ago Rory Stark ★ 5.2k
2
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1
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4.5k
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Answer: A: Error in estimateDispersionsFit(object, fitType = fitType, quiet = quiet) on usi
6.1 years ago Rory Stark ★ 5.2k
1
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0
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2.7k
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Answer: A: diffBind report Fold scale
6.1 years ago Rory Stark ★ 5.2k
0
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0
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4.2k
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Comment: C: How to get all possible comparisons in DiffBind
6.1 years ago Rory Stark ★ 5.2k
3
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3
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4.2k
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Answer: A: How to get all possible comparisons in DiffBind
6.1 years ago Rory Stark ★ 5.2k
1
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1
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1.7k
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Comment: C: sorted the results of function dba.report in DiffBind R package
6.2 years ago Rory Stark ★ 5.2k
2
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2
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1.7k
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Answer: A: sorted the results of function dba.report in DiffBind R package
6.2 years ago Rory Stark ★ 5.2k
1
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1
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2.3k
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Answer: A: dba.count Can't count: some peaksets are not associated with a .bam file.
6.3 years ago Rory Stark ★ 5.2k
0
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1
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3.4k
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Answer: A: DiffBind: Error in heights * sapply(called, function(x) x)
6.3 years ago Rory Stark ★ 5.2k
2
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0
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882
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Answer: A: dba.count binding matrix coordinates
6.3 years ago Rory Stark ★ 5.2k
0
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0
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1.4k
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Answer: A: Use DiffBind to find differential peaks among multiple cell types
6.3 years ago Rory Stark ★ 5.2k
1
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0
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1.0k
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Answer: A: How to color different column bars independently using dba.plotHeatmap (DiffBind
6.3 years ago Rory Stark ★ 5.2k
0
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0
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846
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Answer: A: adding a new consensus peakset question
6.3 years ago Rory Stark ★ 5.2k
3
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1
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1.7k
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Answer: A: diffbind finding not differential site
6.3 years ago Rory Stark ★ 5.2k
3
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1
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1.6k
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Answer: A: Differential analysis of multiple samples with different time points
6.3 years ago Rory Stark ★ 5.2k
0
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1
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852
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Answer: A: dba.report() output counts
6.4 years ago Rory Stark ★ 5.2k
0
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0
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829
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Answer: A: Blocking factors for differential binding analysis with DiffBind
6.4 years ago Rory Stark ★ 5.2k
0
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1
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1.8k
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Answer: A: Is there a way to run Diffbind without the normalization ?
6.4 years ago Rory Stark ★ 5.2k
1
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1
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1.7k
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Answer: A: DiffBind confuses coordinates of peaks
6.4 years ago Rory Stark ★ 5.2k
0
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0
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762
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Comment: C: Question of DiffBind for ChIP-Seq analysis
6.4 years ago Rory Stark ★ 5.2k
0
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1
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1.7k
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Comment: C: DiffBind confuses coordinates of peaks
6.4 years ago Rory Stark ★ 5.2k
1
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2
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1.1k
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Answer: A: How to get peaks summit using dba.peakset
6.4 years ago Rory Stark ★ 5.2k
1
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1
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762
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Answer: A: Question of DiffBind for ChIP-Seq analysis
6.5 years ago Rory Stark ★ 5.2k
0
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0
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2.0k
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Comment: C: DiffBind MA plot
6.5 years ago Rory Stark ★ 5.2k
1
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1
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2.3k
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Comment: C: DESeq2 baseMean from DiffBind summarizedExperiment
6.5 years ago Rory Stark ★ 5.2k
0
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1
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5.3k
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Comment: C: DiffBind differential binding normalization with different levels of binding
6.5 years ago Rory Stark ★ 5.2k
0
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1
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1.1k
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Comment: C: DiffBind: dba.overlap error
6.5 years ago Rory Stark ★ 5.2k
1
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1
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3.0k
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Answer: A: How to get the list of genes from DiffBind dba.report or dba.peakset
6.5 years ago Rory Stark ★ 5.2k
0
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1
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1.5k
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Answer: A: Differential ChIP-seq analysis
6.6 years ago Rory Stark ★ 5.2k
0
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0
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2.5k
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Comment: C: Changing box plot font sizes for axes and labels in DiffBind
6.7 years ago Rory Stark ★ 5.2k
1
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0
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899
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Answer: A: getting DiffBind full result list
6.7 years ago Rory Stark ★ 5.2k
0
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0
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927
views
Answer: A: change x- and y-axis limit within dba.plotVolcano in DiffBind
6.7 years ago Rory Stark ★ 5.2k
928 results • Page 10 of 19
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