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0
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0
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581
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Comment: Comment: DiffBind full library size not reliable
8 weeks ago Rory Stark ★ 5.2k
0
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0
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377
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Comment: Comment: Create merged ChIP heatmap across conditions
10 weeks ago Rory Stark ★ 5.2k
1
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1
reply
377
views
Answer: Answer: Create merged ChIP heatmap across conditions
11 weeks ago Rory Stark ★ 5.2k
0
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2
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971
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Answer: Answer: More regions in union when increasing DBA$config$mergeOverlap
5 months ago Rory Stark ★ 5.2k
2
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1
reply
756
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Answer: Answer: [Diffbind] Blacklist error: Error: Invalid Normalization and Unable to apply Bla
5 months ago Rory Stark ★ 5.2k
0
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0
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2.2k
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Comment: Comment: Subtracting INPUT reads from ChIP read counts.
8 months ago Rory Stark ★ 5.2k
0
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0
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3.2k
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Comment: Comment: Technical details of DiffBind correlation analysis
8 months ago Rory Stark ★ 5.2k
0
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0
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2.1k
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Comment: Comment: DiffBind error: diffbind DESeq2 analysis has not been run for this contrast
9 months ago Rory Stark ★ 5.2k
0
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1
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1.4k
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Answer: Answer: DiffBind returns different grey lists every time I run dba.blacklist even if I s
12 months ago Rory Stark ★ 5.2k
2
votes
1
reply
614
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Answer: Answer: DiffBind dba.analyze function doesn't have bSubControl option anymore?
12 months ago Rory Stark ★ 5.2k
0
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0
replies
1.5k
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Comment: Comment: DiffBind handling of replicates and consensus
12 months ago Rory Stark ★ 5.2k
1
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1
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1.7k
views
Comment: Comment: DiffBind: dba.plotProfile(profiles)
12 months ago Rory Stark ★ 5.2k
1
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1
reply
897
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Answer: Answer: DiffBind plot.profile y-axis unit and individual locus value on the heatmap
13 months ago Rory Stark ★ 5.2k
0
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0
replies
656
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Comment: Comment: DiffBind error
13 months ago Rory Stark ★ 5.2k
1
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0
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3.0k
views
Answer: Answer: Help with error DiffBind
14 months ago Rory Stark ★ 5.2k
0
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0
replies
1.3k
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Comment: Comment: DiffBind does not use DESeq2 MLE estimation of fold change
14 months ago Rory Stark ★ 5.2k
0
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0
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3.7k
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Answer: Answer: Question regarding lfcShrink types in DiffBind
14 months ago Rory Stark ★ 5.2k
0
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0
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1.3k
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Answer: Answer: DiffBind dropping peaks in ATAC-seq data
14 months ago Rory Stark ★ 5.2k
0
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0
replies
5.7k
views
Answer: Answer: diffbind
14 months ago Rory Stark ★ 5.2k
0
votes
0
replies
875
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Comment: Comment: DiffBind issue with edgeR$bTagwise and DESeq2$fitType
14 months ago Rory Stark ★ 5.2k
0
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1
reply
875
views
Answer: Answer: DiffBind issue with edgeR$bTagwise and DESeq2$fitType
14 months ago Rory Stark ★ 5.2k
0
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1
reply
1.5k
views
Answer: Answer: DiffBind handling of replicates and consensus
14 months ago Rory Stark ★ 5.2k
0
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2
replies
5.7k
views
Answer: Answer: diffbind
14 months ago Rory Stark ★ 5.2k
1
vote
1
reply
861
views
Answer: Answer: DiffBind Using edgeR: TMM Normalisation produces identical results to Library Si
15 months ago Rory Stark ★ 5.2k
0
votes
0
replies
711
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Answer: Answer: DiffBind output issues
15 months ago Rory Stark ★ 5.2k
1
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1
reply
1.1k
views
Answer: Answer: Interpret plots from DiffBind
15 months ago Rory Stark ★ 5.2k
2
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1
reply
1.1k
views
Comment: Comment: DESeq2 lfcShrink function used in DiffBind package
15 months ago Rory Stark ★ 5.2k
2
votes
0
replies
813
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Answer: Answer: Sample sheet file for DiffBind
15 months ago Rory Stark ★ 5.2k
1
vote
0
replies
2.5k
views
Comment: Comment: Interpret plot from DiffBind
15 months ago Rory Stark ★ 5.2k
1
vote
1
reply
2.5k
views
Comment: Comment: Interpret plot from DiffBind
16 months ago Rory Stark ★ 5.2k
1
vote
1
reply
2.5k
views
Comment: Comment: Interpret plot from DiffBind
16 months ago Rory Stark ★ 5.2k
1
vote
1
reply
2.5k
views
Comment: Comment: Interpret plot from DiffBind
16 months ago Rory Stark ★ 5.2k
0
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1
reply
1.6k
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Answer: Answer: Diffbind "No genome detected"
16 months ago Rory Stark ★ 5.2k
1
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3
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2.5k
views
Comment: Comment: Interpret plot from DiffBind
16 months ago Rory Stark ★ 5.2k
3
votes
1
reply
2.5k
views
Answer: Answer: Interpret plot from DiffBind
16 months ago Rory Stark ★ 5.2k
0
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0
replies
1.5k
views
Comment: Comment: DiffBind - Retrieving the differentially bound sites - HOW to calculate fold-cha
16 months ago Rory Stark ★ 5.2k
0
votes
0
replies
688
views
Answer: Answer: dba.count with pre-defined regions produced only 10% results
16 months ago Rory Stark ★ 5.2k
0
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0
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892
views
Answer: Answer: DiffBind dba() in parallel
16 months ago Rory Stark ★ 5.2k
1
vote
1
reply
1.5k
views
Answer: Answer: DiffBind - Retrieving the differentially bound sites - HOW to calculate fold-cha
16 months ago Rory Stark ★ 5.2k
1
vote
0
replies
969
views
Answer: Answer: Getting different differentially accessible peaks between versions
16 months ago Rory Stark ★ 5.2k
0
votes
1
reply
1.7k
views
Comment: Comment: DiffBind - question about showing significant difference on peaks with 0 fold ch
17 months ago Rory Stark ★ 5.2k
2
votes
1
reply
2.6k
views
Answer: Answer: Errors with DiffBind, Error in peaks[, pCol]/max(peaks[, pCol]) : non-numeric
17 months ago Rory Stark ★ 5.2k
0
votes
1
reply
1.7k
views
Comment: Comment: DiffBind - question about showing significant difference on peaks with 0 fold ch
17 months ago Rory Stark ★ 5.2k
0
votes
1
reply
1.7k
views
Answer: Answer: DiffBind - question about showing significant difference on peaks with 0 fold ch
17 months ago Rory Stark ★ 5.2k
0
votes
1
reply
1.5k
views
Comment: Comment: DiffBind - question on the use of filtered or unfiltered input data
17 months ago Rory Stark ★ 5.2k
1
vote
1
reply
1.2k
views
Comment: Comment: Positive and negative value fold value in ATAC seq using DiffBind
17 months ago Rory Stark ★ 5.2k
2
votes
0
replies
783
views
Answer: Answer: how diffbind count the reads of each peak in each sample?
17 months ago Rory Stark ★ 5.2k
0
votes
1
reply
1.5k
views
Answer: Answer: DiffBind - question on the use of filtered or unfiltered input data
17 months ago Rory Stark ★ 5.2k
1
vote
1
reply
1.2k
views
Comment: Comment: Positive and negative value fold value in ATAC seq using DiffBind
17 months ago Rory Stark ★ 5.2k
2
votes
1
reply
1.2k
views
Answer: Answer: Positive and negative value fold value in ATAC seq using DiffBind
17 months ago Rory Stark ★ 5.2k
930 results • Page 1 of 19
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