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copy number segment calling with cn.mop when just one sample?
cn.mops cn.mops
updated 9.5 years ago by ▴ 540 • written 11.6 years ago by ▴ 750
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961
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new: Mentored Projects at Bioconductor
updated 9.6 years ago by ▴ 10 • written 12.3 years ago by ▴ 750
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1.0k
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Answer: A: active subnetwork determination
10.9 years ago Paul Shannon ▴ 750
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1.6k
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Comment: C: biogrid cytoscape plugin
10.9 years ago Paul Shannon ▴ 750
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tudelft.CytoscapeRPC.CytoscapeRPCCallHandler: width is too small
Network Network
11.0 years ago Paul Shannon ▴ 750
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1.2k
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RCytoscape: tudelft.CytoscapeRPC.CytoscapeRPCCallHandler: width is too small
SystemsBiology Network RCytoscape SystemsBiology Network RCytoscape
11.0 years ago Paul Shannon ▴ 750
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1.4k
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bug in graph::addNode() w/ graph::edgeData()
graph graph
updated 11.0 years ago by ★ 3.4k • written 11.0 years ago by ▴ 750
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1.9k
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Answer: A: How to compare GO term lists and create matching network?
11.2 years ago Paul Shannon ▴ 750
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1.6k
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Answer: A: bug in graph::addNode() w/ graph::edgeData()
11.2 years ago Paul Shannon ▴ 750
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1
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3.9k
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Comment: C: Directed MST (Edmond's Algorithm)
11.2 years ago Paul Shannon ▴ 750
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5
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3.4k
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getting a list of genomic sequences from a list of gene names
updated 11.5 years ago by ★ 11k • written 11.5 years ago by ▴ 750
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8
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3.6k
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QuasR: how to use an indexed reference genome?
BSgenome BSgenome genomes QuasR BSgenome BSgenome genomes QuasR
updated 11.6 years ago by ▴ 350 • written 11.6 years ago by ▴ 750
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1.5k
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Answer: A: Queries about getting annotation post-Limma analysis
11.6 years ago Paul Shannon ▴ 750
0
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2
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1.9k
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cn.mops: copy number for low-coverage bam files?
Sequencing Coverage cn.mops Sequencing Coverage cn.mops
updated 11.7 years ago by ▴ 540 • written 11.7 years ago by ▴ 750
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1.9k
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Comment: C: cn.mops: copy number for low-coverage bam files?
11.7 years ago Paul Shannon ▴ 750
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0
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1.1k
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Answer: A: Doubt RCytoscape
11.7 years ago Paul Shannon ▴ 750
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0
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1.0k
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Error when try VariantAnnotation filterVcf vignette example
VariantAnnotation VariantAnnotation VariantAnnotation VariantAnnotation
11.7 years ago Paul Shannon ▴ 750
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1
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2.0k
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Comment: C: Visualization of metabolic network in lpSolve format
11.8 years ago Paul Shannon ▴ 750
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0
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1.2k
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Answer: A: 5000 nodes RCytoscape
11.8 years ago Paul Shannon ▴ 750
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1.2k
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5000 nodes RCytoscape
Network graph Network graph
11.8 years ago Paul Shannon ▴ 750
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1.7k
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Comment: C: Quick questions about RCytoscape
11.8 years ago Paul Shannon ▴ 750
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1.7k
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Answer: A: Quick questions about RCytoscape
11.8 years ago Paul Shannon ▴ 750
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1
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1.4k
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ChIPpeakAnno "examplePattern.fa" file
rGADEM MotifDb rGADEM MotifDb
updated 11.8 years ago by ▴ 80 • written 11.9 years ago by ▴ 750
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1
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2.0k
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Comment: C: Visualization of metabolic network in lpSolve format
11.8 years ago Paul Shannon ▴ 750
0
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1
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2.0k
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Answer: A: Visualization of metabolic network in lpSolve format
11.8 years ago Paul Shannon ▴ 750
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2
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1.2k
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Answer: A: bug in graph::edgeData()
11.9 years ago Paul Shannon ▴ 750
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0
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2.0k
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Answer: A: KEGGgraph problem
11.9 years ago Paul Shannon ▴ 750
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1
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3.2k
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Comment: C: about ComBat plot for non parametric
12.0 years ago Paul Shannon ▴ 750
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1
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3.2k
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Comment: C: about ComBat plot for non parametric
12.0 years ago Paul Shannon ▴ 750
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0
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1.5k
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Comment: C: geneid to gene name conversion
12.0 years ago Paul Shannon ▴ 750
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1
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1.5k
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Answer: A: geneid to gene name conversion
12.0 years ago Paul Shannon ▴ 750
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0
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1.0k
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Answer: A: DNA motif sequence prediction - finding a method to compare with
12.0 years ago Paul Shannon ▴ 750
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1
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2.5k
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Answer: A: Pasilla data for "Counting with summarizeOverlaps/GenomicRanges"
12.0 years ago Paul Shannon ▴ 750
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0
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769
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Answer: A: question about KEGGSOAP package
12.0 years ago Paul Shannon ▴ 750
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0
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2.0k
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RCytoscape on Windows
Network charm RCytoscape Network charm RCytoscape
12.1 years ago Paul Shannon ▴ 750
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1
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1.5k
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Answer: A: VariantAnnotation ALT Field
12.1 years ago Paul Shannon ▴ 750
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2
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1.3k
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RCytoscape on Windows
RCytoscape RCytoscape
12.1 years ago Paul Shannon ▴ 750
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0
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1.3k
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Answer: A: RCytoscape on Windows
12.1 years ago Paul Shannon ▴ 750
0
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1
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1.9k
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promoter prediction
Transcription MotIV MotifDb Transcription MotIV MotifDb
updated 12.1 years ago by ▴ 380 • written 12.1 years ago by ▴ 750
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2.1k
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Comment: C: KEGGgraph
12.2 years ago Paul Shannon ▴ 750
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0
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2.1k
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Answer: A: KEGGgraph
12.2 years ago Paul Shannon ▴ 750
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1
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5.4k
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Comment: C: Extend GRanges start/end
12.2 years ago Paul Shannon ▴ 750
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0
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2.9k
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Comment: C: A basic question about retrieve the absolute genome position from the output of
12.2 years ago Paul Shannon ▴ 750
1
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1
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5.4k
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Answer: A: Extend GRanges start/end
12.2 years ago Paul Shannon ▴ 750
0
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1
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2.9k
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Comment: C: A basic question about retrieve the absolute genome position from the output of
12.2 years ago Paul Shannon ▴ 750
0
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0
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1.6k
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Answer: A: enrichment + topGO
12.3 years ago Paul Shannon ▴ 750
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0
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1.3k
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Answer: A: which R package can be used to do all the GO analysis
12.3 years ago Paul Shannon ▴ 750
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0
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1.3k
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Answer: A: which R package can be used to do all the GO analysis
12.3 years ago Paul Shannon ▴ 750
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0
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1.2k
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Comment: C: Mentored Projects at Bioconductor
12.3 years ago Paul Shannon ▴ 750
0
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0
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1.2k
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Answer: A: using RUnit inspect() feature in package testing
12.4 years ago Paul Shannon ▴ 750
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