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Answer: Answer: fast apply on RleList
5 days ago James W. MacDonald 68k
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200
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Answer: Answer: Custom CDF creation for HTA 2.0 array using GTF annotation
5 days ago James W. MacDonald 68k
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247
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Answer: Answer: DESeq2 - am I extracting results incorrectly?
7 days ago James W. MacDonald 68k
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2.5k
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Answer: Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin
12 days ago James W. MacDonald 68k
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841
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Comment: Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species
13 days ago James W. MacDonald 68k
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841
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Answer: Answer: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species
13 days ago James W. MacDonald 68k
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528
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Answer: Answer: Mismatch between Illumina Mouse Methylation BeadChip annotation and genome brows
19 days ago James W. MacDonald 68k
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1.4k
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Answer: Answer: Package developing and interoperation with Bioconductor
19 days ago James W. MacDonald 68k
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433
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Answer: Answer: Merging EPICV1 and V2 betas
21 days ago James W. MacDonald 68k
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168
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Answer: Answer: Merging annotation with differential expression output
22 days ago James W. MacDonald 68k
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167
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Answer: Answer: best way to grouping GSM belonging to different datasets (with different platfor
23 days ago James W. MacDonald 68k
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1.2k
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Answer: Answer: CpGs with genomic positions greater than the chromosome size in EPICv2?
26 days ago James W. MacDonald 68k
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406
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Comment: Comment: DESEQ2 looking at main effects while controlling for a continuous variable
26 days ago James W. MacDonald 68k
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406
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Answer: Answer: DESEQ2 looking at main effects while controlling for a continuous variable
27 days ago James W. MacDonald 68k
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526
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Answer: Answer: Guidance Needed: Best Practices for Handling Technical Replicates in RNA-seq Ana
29 days ago James W. MacDonald 68k
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412
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Answer: Answer: affy::rma results doesn't match with ncbi website
4 weeks ago James W. MacDonald 68k
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793
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Answer: Answer: Use of org.Rn.eg.db with GRCr8 reference genome
4 weeks ago James W. MacDonald 68k
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637
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Answer: Answer: Clarification on GOALL / GO2ALLORFs mapping
4 weeks ago James W. MacDonald 68k
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301
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Comment: Comment: Discrepancy between Excel TPP-TR reported values and the Melt Curve reported val
5 weeks ago James W. MacDonald 68k
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1.1k
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Answer: Answer: Limma - Complex 2-way multi-level contrast with paired samples
5 weeks ago James W. MacDonald 68k
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536
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Answer: Answer: Using tximport for kallisto aligned TOIL data
5 weeks ago James W. MacDonald 68k
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340
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Answer: Answer: Reading gene expression data in GPR format and converting it to xlsx format
5 weeks ago James W. MacDonald 68k
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823
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Answer: Answer: Differential expression of proteins using somascan data
5 weeks ago James W. MacDonald 68k
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280
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Answer: Answer: library org.Hs.eg.db failing to install
5 weeks ago James W. MacDonald 68k
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364
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Answer: Answer: Seeking Advice on HTA 2.0 Microarray Data Processing with Oligo Package
5 weeks ago James W. MacDonald 68k
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249
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Comment: Comment: Conumee2 - CNV.summaryplot()
6 weeks ago James W. MacDonald 68k
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266
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Answer: Answer: myvariant error
6 weeks ago James W. MacDonald 68k
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249
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Answer: Answer: Conumee2 - CNV.summaryplot()
6 weeks ago James W. MacDonald 68k
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278
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Answer: Answer: pairedGSEA input files
6 weeks ago James W. MacDonald 68k
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1.0k
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Answer: Answer: Group-specific condition effects with individuals nested: matrix is not full ra
6 weeks ago James W. MacDonald 68k
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185
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Answer: Answer: TheProcess got Killed
6 weeks ago James W. MacDonald 68k
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1.0k
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Comment: Comment: Group-specific condition effects with individuals nested: matrix is not full ra
7 weeks ago James W. MacDonald 68k
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398
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Answer: Answer: How to adjust for Cell Type Differences between groups in Pseudo-Bulk Differenti
7 weeks ago James W. MacDonald 68k
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578
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Answer: Answer: normalizatino of dna methylation EPIC data
7 weeks ago James W. MacDonald 68k
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385
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Answer: Answer: WGCNA
7 weeks ago James W. MacDonald 68k
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241
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Answer: Answer: Pathview visualisation not including positive log2 fold changes
8 weeks ago James W. MacDonald 68k
1
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0
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486
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Answer: Answer: UniProt.ws query for single UniRef90 ID takes several minutes
8 weeks ago James W. MacDonald 68k
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2
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429
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Answer: Answer: batch effect removal for agilent microarray data
8 weeks ago James W. MacDonald 68k
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1.0k
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Answer: Answer: Store Matrix in DataFrame Cell
9 weeks ago James W. MacDonald 68k
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907
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Comment: Comment: For some reason I can't update BiocManager to 3.20
9 weeks ago James W. MacDonald 68k
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2
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561
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Answer: Answer: DESeq2 adujsted p-value cutoff seemingly not working
9 weeks ago James W. MacDonald 68k
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1
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807
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Answer: Answer: Issue with assigning transcript IDs to reads when using summarizeOverlaps(mode =
10 weeks ago James W. MacDonald 68k
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335
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Answer: Answer: Meffil: error in functional normalization function (Error in rg.to.mu(rg, probes
10 weeks ago James W. MacDonald 68k
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1
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473
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Answer: Answer: displaying the differential expression with deseq2 over 4X2 samples with the in
10 weeks ago James W. MacDonald 68k
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223
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Answer: Answer: I am having issues with bowtie2_build
11 weeks ago James W. MacDonald 68k
1
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0
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489
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Answer: Answer: Selection of correct coefficients or contrasts in DESeq2
11 weeks ago James W. MacDonald 68k
1
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1
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1.3k
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Comment: Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
11 weeks ago James W. MacDonald 68k
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210
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Answer: Answer: Unable to find sample sheet file for ChAMP methylation data analysis
11 weeks ago James W. MacDonald 68k
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182
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Answer: Answer: affymetrix
12 weeks ago James W. MacDonald 68k
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1.3k
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Comment: Comment: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?
12 weeks ago James W. MacDonald 68k
8,779 results • Page 1 of 176
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