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13
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6
replies
7.2k
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DESeq2 multiple interaction terms 3-factor design
deseq2 deseq interactions multiple factor design
updated 8.5 years ago by 42k • written 8.5 years ago by ▴ 290
0
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7.2k
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Comment: C: DESeq2 multiple interaction terms 3-factor design
8.5 years ago Stephen Turner ▴ 290
1
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0
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2.1k
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Answer: A: non-BiomaRt die
9.4 years ago Stephen Turner ▴ 290
0
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1
reply
2.1k
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Affymetrix HTA 2 array analysis
BiocViews Annotation Cancer Breast Organism PROcess biocViews pdInfoBuilder BiocViews
updated 10.6 years ago by ★ 4.3k • written 10.6 years ago by ▴ 290
0
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2
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1.3k
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DESeq Normalization Question
Normalization DESeq Normalization DESeq
updated 11.2 years ago by ★ 7.9k • written 11.2 years ago by ▴ 290
2
votes
6
replies
12k
views
DESeq2 vs limma/voom: PCA completely different. How to proceed?
limma DESeq2 limma DESeq2
updated 11.2 years ago by ★ 3.7k • written 11.2 years ago by ▴ 290
0
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0
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12k
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Comment: C: DESeq2 vs limma/voom: PCA completely different. How to proceed?
11.2 years ago Stephen Turner ▴ 290
0
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1
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1.7k
views
Comment: C: MEDIPS error extending reads
11.2 years ago Stephen Turner ▴ 290
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1
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1.7k
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Comment: C: MEDIPS error extending reads
11.2 years ago Stephen Turner ▴ 290
0
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1
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1.7k
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Comment: C: MEDIPS error extending reads
11.2 years ago Stephen Turner ▴ 290
0
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7
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1.7k
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MEDIPS error extending reads
Alignment BSgenome BSgenome MEDIPS Alignment BSgenome BSgenome MEDIPS
updated 11.2 years ago by ▴ 570 • written 11.2 years ago by ▴ 290
0
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1
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1.3k
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Segfault in MEDIPS MEDIPS.methylProfiling() with ROI file
Preprocessing BSgenome biomaRt BSgenome GenomicRanges MEDIPS Preprocessing BSgenome MEDIPS
updated 11.3 years ago by ▴ 570 • written 11.3 years ago by ▴ 290
0
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1
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1.1k
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Answer: A: Fwd: Segfault in MEDIPS MEDIPS.methylProfiling() with ROI file
11.4 years ago Stephen Turner ▴ 290
0
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0
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783
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Segfault in MEDIPS MEDIPS.methylProfiling() with ROI file
Microarray BSgenome BSgenome MEDIPS Microarray BSgenome BSgenome MEDIPS
11.4 years ago Stephen Turner ▴ 290
0
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1
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2.4k
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Comment: C: CDF for GeneChip miRNA 2 array - Is there a miRNA 3 CDF?
11.7 years ago Stephen Turner ▴ 290
0
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1
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2.4k
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Comment: C: CDF for GeneChip miRNA 2 array - Is there a miRNA 3 CDF?
11.7 years ago Stephen Turner ▴ 290
0
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8
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2.4k
views
CDF for GeneChip miRNA 2 array - Is there a miRNA 3 CDF?
miRNA GO cdf affy arrayQualityMetrics miRNA GO cdf affy arrayQualityMetrics
updated 11.7 years ago by 66k • written 11.7 years ago by ▴ 290
0
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1
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1.8k
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Answer: A: odd results with pvclust
11.7 years ago Stephen Turner ▴ 290
0
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2
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2.9k
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DEXSeq: problem with dexseq_prepare_annotation.py
updated 12.2 years ago by ★ 1.9k • written 12.2 years ago by ▴ 290
0
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1
reply
7.1k
views
Comment: C: DeSeq vs current version of Cuffdiff
12.4 years ago Stephen Turner ▴ 290
0
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2
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7.1k
views
Answer: A: DeSeq vs current version of Cuffdiff
12.4 years ago Stephen Turner ▴ 290
0
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1
reply
1.7k
views
Annotating limma results: Affymetrix probe IDs not mapping to hugene10stprobeset.db
Microarray Annotation annotate limma Microarray Annotation annotate limma
updated 12.5 years ago by 66k • written 12.5 years ago by ▴ 290
0
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4
replies
1.6k
views
Summarizing two-channel data (RGList, MAList) for limma analysis
Normalization probe affy Normalization probe affy
updated 12.5 years ago by ▴ 90 • written 12.5 years ago by ▴ 290
0
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1
reply
2.1k
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limma topTable with gene symbols in output: annotate problem
Annotation cdf probe annotate affy limma biomaRt Annotation cdf probe annotate affy
updated 12.5 years ago by ★ 7.2k • written 12.5 years ago by ▴ 290
0
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1
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1.1k
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limma - 2-color agilent microarray, GO annotation
Annotation GO annotate oligo Annotation GO annotate oligo
updated 12.6 years ago by ★ 13k • written 12.6 years ago by ▴ 290
0
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0
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1.2k
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Problem with limma for two-color factorial design - Coefficients not estimable
Microarray Normalization limma ArrayExpress Microarray Normalization limma ArrayExpress
12.7 years ago Stephen Turner ▴ 290
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