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5
replies
2.3k
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Normalizing Affy Almac Xcel Array Data from CEL files
Annotation
affy
oligo
ffpe
Annotation
affy
oligo
ffpe
written 11.0 years ago by
Guest User
★ 13k
0
votes
2
replies
2.2k
views
Can logFC be used to determine effect size?
updated 6.0 years ago by
Bioconductor Community
0 • written 11.4 years ago by
Guest User
★ 13k
0
votes
4
replies
20k
views
XML package cannot be installed
PROcess
PROcess
updated 6.7 years ago by
nilesh.iiita
• 0 • written 12.4 years ago by
Guest User
★ 13k
0
votes
3
replies
2.3k
views
File format for single channel analysis of Agilent microarray data with Limma?
Microarray
Microarray
updated 6.9 years ago by
Gordon Smyth
52k • written 12.6 years ago by
Guest User
★ 13k
0
votes
3
replies
1.5k
views
unable to install bioconductor package
updated 7.8 years ago by
farahqureshi5
• 0 • written 12.2 years ago by
Guest User
★ 13k
0
votes
2
replies
2.2k
views
GOSim yeast
GO
Yeast
GOSim
GO
Yeast
GOSim
updated 7.8 years ago by
solis
• 0 • written 12.6 years ago by
Guest User
★ 13k
0
votes
5
replies
10.0k
views
unable to install package
updated 7.9 years ago by
amsindra
• 0 • written 11.1 years ago by
Guest User
★ 13k
0
votes
7
replies
5.9k
views
DESeq2 multiple factors nested design
DESeq
DESeq2
DESeq
DESeq2
updated 8.0 years ago by
blawney
• 0 • written 10.7 years ago by
Guest User
★ 13k
0
votes
4
replies
2.7k
views
Can\'t load new BioC packages
updated 8.2 years ago by
katwre
• 0 • written 10.7 years ago by
Guest User
★ 13k
0
votes
3
replies
3.4k
views
Is there a package for peptide alignment with protein sequences?
Alignment
Alignment
updated 8.3 years ago by
contactbiostructure
• 0 • written 11.2 years ago by
Guest User
★ 13k
3
votes
8
replies
4.9k
views
DESeq / DESeq2 for translation efficiency in polysome profiling or ribsome profiling experiments
Sequencing
DESeq
Sequencing
DESeq
updated 8.3 years ago by
contactbiostructure
• 0 • written 11.0 years ago by
Guest User
★ 13k
0
votes
3
replies
5.6k
views
Installation Problems
updated 8.7 years ago by
angelicarasco
• 0 • written 11.6 years ago by
Guest User
★ 13k
1
vote
3
replies
2.6k
views
maSigPro RNAseq data (counts=TRUE will not work for negative binomial)
updated 8.8 years ago by
jariani.abb
▴ 10 • written 10.8 years ago by
Guest User
★ 13k
0
votes
1
reply
1.3k
views
ComBat error message
updated 9.0 years ago by
Kirsan1452
• 0 • written 10.9 years ago by
Guest User
★ 13k
0
votes
1
reply
3.7k
views
maSigPro help- p. vector error
RNASeq
maSigPro
a4
RNASeq
maSigPro
a4
updated 9.2 years ago by
Mª José Nueda
▴ 90 • written 10.9 years ago by
Guest User
★ 13k
0
votes
2
replies
1.9k
views
preparing sequencing data for use with anota
Sequencing
Normalization
PROcess
anota
Sequencing
Normalization
PROcess
anota
updated 9.4 years ago by
kesarwani.anil
• 0 • written 10.8 years ago by
Guest User
★ 13k
0
votes
2
replies
988
views
DEXSEq warning when using TRT functions
DEXSeq
DEXSeq
updated 9.4 years ago by
rahel14350
▴ 10 • written 11.5 years ago by
Guest User
★ 13k
2
votes
5
replies
4.6k
views
Running DESeq with 1000 samples
DESeq
DESeq
updated 9.6 years ago by
Guest195
• 0 • written 10.5 years ago by
Guest User
★ 13k
0
votes
5
replies
5.7k
views
How to do Affy ST array analysis
Annotation
Normalization
hgu133a
probe
affy
oligo
Annotation
Normalization
hgu133a
probe
updated 9.6 years ago by
benhrif.oussama
• 0 • written 10.6 years ago by
Guest User
★ 13k
2
votes
4
replies
7.5k
views
DESeq2 Error in estimateSizeFactorsForMatrix
Sequencing
Alignment
DESeq
DESeq2
Sequencing
Alignment
DESeq
DESeq2
updated 9.6 years ago by
gaelgarcia
• 0 • written 10.6 years ago by
Guest User
★ 13k
1
vote
4
replies
2.8k
views
annotating the results with association gene symbol
limma
updated 9.6 years ago by
Gordon Smyth
52k • written 10.7 years ago by
Guest User
★ 13k
0
votes
4
replies
4.2k
views
Problem with DESeq : \"Error in FUN(newX[, i], ...) : could not find function \"locfunc\"\"
DESeq
DESeq
updated 9.7 years ago by
Wolfgang Huber
★ 13k • written 10.6 years ago by
Guest User
★ 13k
0
votes
2
replies
1.6k
views
RCircos 2D track plot for a small region of genome
BSgenome
BSgenome
BSgenome
BSgenome
updated 9.8 years ago by
Hu, Ying NIH/NCI [E]
▴ 50 • written 11.0 years ago by
Guest User
★ 13k
0
votes
4
replies
3.0k
views
Error using Bsmooth.tstat due to NAs
Coverage
bsseq
updated 14 months ago by
Adam
• 0 • written 10.3 years ago by
Guest User
★ 13k
3
votes
2
replies
2.2k
views
non-BiomaRt die
biomaRt
biomaRt
updated 9.9 years ago by
Stephen Turner
▴ 290 • written 10.9 years ago by
Guest User
★ 13k
0
votes
0
replies
1.5k
views
Comment:
A: edgeR
updated 9.9 years ago by
Gordon Smyth
52k • written 10.9 years ago by
Guest User
★ 13k
0
votes
3
replies
1.5k
views
bug report in pathview
pathview
pathview
updated 10.1 years ago by
tao2013
• 0 • written 11.3 years ago by
Guest User
★ 13k
0
votes
1
reply
1.9k
views
Limma table results (time course analysis)
limma
time course
updated 10.1 years ago by
Gordon Smyth
52k • written 10.7 years ago by
Guest User
★ 13k
0
votes
1
reply
4.0k
views
DESeq2 - factor base level changes the DE genes.
RNASeq
Genetics
DESeq2
RNASeq
Genetics
DESeq2
updated 10.2 years ago by
Michael Love
43k • written 10.4 years ago by
Guest User
★ 13k
0
votes
9
replies
2.8k
views
MEDIPS: how does MEDIPS define a methylated region / cluster?
Sequencing
MEDIPS
updated 10.2 years ago by
mengru1223
• 0 • written 10.3 years ago by
Guest User
★ 13k
6
votes
2
replies
2.0k
views
Should I skip the eBayes step when using Limma for Affymetrix miRNA v1 chip?
miRNA
cdf
probe
limma
miRNA
cdf
probe
limma
updated 10.2 years ago by
Gordon Smyth
52k • written 10.3 years ago by
Guest User
★ 13k
3
votes
1
reply
1.5k
views
Bioinformatics researching Schizophrenia
miRNA
updated 10.3 years ago by
Valerie Obenchain
★ 6.8k • written 10.3 years ago by
Guest User
★ 13k
3
votes
3
replies
2.8k
views
design matrix in limma
updated 10.3 years ago by
Bernd Klaus
▴ 610 • written 10.3 years ago by
Guest User
★ 13k
0
votes
1
reply
2.1k
views
Export mzML via mzR or other bioconductor packages
PROcess
mzR
PROcess
mzR
updated 10.3 years ago by
Laurent Gatto
1.6k • written 10.8 years ago by
Guest User
★ 13k
0
votes
2
replies
2.2k
views
HGU133Plus2 CDF vs hgu133plus2hsentrezgcdf CDF (30% difference in results)
GO
hgu133plus2
cdf
affy
limma
updated 10.3 years ago by
Steve Lianoglou
★ 13k • written 10.3 years ago by
Guest User
★ 13k
0
votes
5
replies
2.1k
views
positively correlated genes
updated 10.3 years ago by
Gordon Smyth
52k • written 10.3 years ago by
Guest User
★ 13k
0
votes
1
reply
1.1k
views
Ask help for Rcpp
updated 10.3 years ago by
Martin Morgan
25k • written 10.3 years ago by
Guest User
★ 13k
0
votes
2
replies
43k
views
no method for coercing S4 class to a vector
updated 10.3 years ago by
Andrzej Oleś
▴ 750 • written 10.3 years ago by
Guest User
★ 13k
1
vote
2
replies
2.1k
views
log2 as input in limma
updated 10.3 years ago by
James W. MacDonald
67k • written 10.3 years ago by
Guest User
★ 13k
0
votes
1
reply
1.2k
views
GWASTools: quasi-/perfect linear separation
Regression
updated 10.3 years ago by
Stephanie M. Gogarten
▴ 870 • written 10.3 years ago by
Guest User
★ 13k
0
votes
1
reply
1.5k
views
Organism annotation package created with makeOrgPackage doesn't install properly
GO
updated 10.3 years ago by
James W. MacDonald
67k • written 10.3 years ago by
Guest User
★ 13k
0
votes
2
replies
1.7k
views
barcode support for other platforms
frma
updated 10.3 years ago by
Matthew McCall
▴ 830 • written 10.3 years ago by
Guest User
★ 13k
0
votes
1
reply
1.3k
views
Test Statistic in nbinomialTest in DESeq???
DESeq
updated 10.3 years ago by
Wolfgang Huber
★ 13k • written 10.3 years ago by
Guest User
★ 13k
0
votes
0
replies
1.9k
views
Gostats Hypergeometric tests for non model organisms Kegg pathway
Pathways
GO
Organism
GOstats
10.3 years ago
Guest User
★ 13k
0
votes
1
reply
2.3k
views
Converting .gpr files to .csv files
Microarray
GO
convert
updated 10.3 years ago by
James W. MacDonald
67k • written 10.3 years ago by
Guest User
★ 13k
0
votes
7
replies
4.6k
views
HTSeq-Count
updated 10.3 years ago by
Yuan Hao
▴ 240 • written 10.3 years ago by
Guest User
★ 13k
0
votes
0
replies
1.3k
views
virtualArray package
Annotation
Preprocessing
hgu133plus2
hgug4112a
10.3 years ago
Guest User
★ 13k
0
votes
1
reply
1.5k
views
SAM analysis of two color microarray data
Normalization
limma
siggenes
updated 10.3 years ago by
James W. MacDonald
67k • written 10.3 years ago by
Guest User
★ 13k
0
votes
8
replies
1.8k
views
edgeR factorial experiment contrasts
edgeR
updated 10.3 years ago by
James W. MacDonald
67k • written 10.3 years ago by
Guest User
★ 13k
0
votes
6
replies
1.5k
views
edgeR contrast
edgeR
updated 10.3 years ago by
James W. MacDonald
67k • written 10.3 years ago by
Guest User
★ 13k
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