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Dose-Response: Regressiion and ANOVA
Regression DOSE Regression DOSE
updated 19.4 years ago by ▴ 360 • written 19.4 years ago by ▴ 620
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1.2k
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normalizaton between studies
Normalization vsn DOSE Normalization vsn DOSE
updated 19.5 years ago by ▴ 10 • written 19.5 years ago by ▴ 620
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1.3k
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unbalanced design
limma DOSE limma DOSE
updated 19.5 years ago by 51k • written 19.5 years ago by ▴ 620
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1.0k
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normalisation or analysis with batch effects
Cancer Cancer
19.5 years ago Arne.Muller@aventis.com ▴ 620
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1.4k
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Answer: A: Installing Packages from Bioconductor: Error
19.5 years ago Arne.Muller@aventis.com ▴ 620
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776
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excluding absent genes - again
19.7 years ago Arne.Muller@aventis.com ▴ 620
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1.3k
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Answer: A: Normalising divergent samples.
19.8 years ago Arne.Muller@aventis.com ▴ 620
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1.1k
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Friedman test
DOSE DOSE
19.8 years ago Arne.Muller@aventis.com ▴ 620
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10
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4.2k
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GOStat and multiple testing
GO GOstats GO GOstats
updated 19.9 years ago by ▴ 810 • written 19.9 years ago by ▴ 620
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952
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correlation image and tickmarks
affy affy
19.9 years ago Arne.Muller@aventis.com ▴ 620
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0
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815
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MAS5 and Loess normalization
Normalization affy Normalization affy
19.9 years ago Arne.Muller@aventis.com ▴ 620
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1
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1.2k
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Answer: A: heatmaps and pearson correlation
19.9 years ago Arne.Muller@aventis.com ▴ 620
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4
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1.2k
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heatmaps and pearson correlation
19.9 years ago Arne.Muller@aventis.com ▴ 620
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1
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856
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Affy: present genes and anova
updated 20.0 years ago by ★ 6.0k • written 20.0 years ago by ▴ 620
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1.5k
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Anova with ratios
affy DOSE affy DOSE
20.0 years ago Arne.Muller@aventis.com ▴ 620
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1.2k
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Answer: A: Linear modeling for affy experiment
20.0 years ago Arne.Muller@aventis.com ▴ 620
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3
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1.1k
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negative expression values
updated 20.0 years ago by ★ 3.4k • written 20.0 years ago by ▴ 620
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1.1k
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Answer: A: negative expression values
20.0 years ago Arne.Muller@aventis.com ▴ 620
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1
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896
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SparseM not found
graph graph
updated 20.0 years ago by ★ 3.9k • written 20.0 years ago by ▴ 620
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1
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770
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Error loading GOstats
GOstats GOstats
updated 20.0 years ago by ★ 3.9k • written 20.0 years ago by ▴ 620
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1.1k
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Answer: A: Drosophila GeneChip analysis
20.1 years ago Arne.Muller@aventis.com ▴ 620
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1.1k
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Answer: A: Drosophila GeneChip analysis
20.1 years ago Arne.Muller@aventis.com ▴ 620
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1.0k
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Probe level analysis
probe limma DOSE probe limma DOSE
20.1 years ago Arne.Muller@aventis.com ▴ 620
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1.0k
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Answer: A: comparing data frames
20.1 years ago Arne.Muller@aventis.com ▴ 620
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0
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637
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RMA on PM only
20.1 years ago Arne.Muller@aventis.com ▴ 620
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0
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813
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A single linear model for all
DOSE DOSE
20.1 years ago Arne.Muller@aventis.com ▴ 620
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0
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832
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Answer: A: RE: venn diagram
20.1 years ago Arne.Muller@aventis.com ▴ 620
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1
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1.4k
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Answer: A: venn diagram
20.1 years ago Arne.Muller@aventis.com ▴ 620
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2
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2.5k
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Answer: A: venn diagram in R
20.1 years ago Arne.Muller@aventis.com ▴ 620
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0
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788
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hierarchical clustering of chips
Visualization Clustering Visualization Clustering
20.1 years ago Arne.Muller@aventis.com ▴ 620
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1
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802
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when to call pmcorrect in affy
Normalization probe Normalization probe
updated 20.2 years ago by ★ 1.1k • written 20.2 years ago by ▴ 620
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1
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1.0k
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programming problem: running many ANOVAs
DOSE DOSE
updated 20.2 years ago by ▴ 130 • written 20.2 years ago by ▴ 620
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0
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1.3k
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Answer: A: limma and nested factors
20.2 years ago Arne.Muller@aventis.com ▴ 620
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3
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1.3k
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limma and nested factors
probe affy limma probe affy limma
20.2 years ago Arne.Muller@aventis.com ▴ 620
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0
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1.3k
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robust linear model in anovas
DOSE DOSE
20.2 years ago Arne.Muller@aventis.com ▴ 620
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0
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1.1k
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Answer: A: memory usage ReadAffy() and probe level information
20.2 years ago Arne.Muller@aventis.com ▴ 620
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1
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1.2k
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double normalization
updated 20.2 years ago by ★ 6.0k • written 20.2 years ago by ▴ 620
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0
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2.3k
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Answer: A: how deal with multiplicate affy probes?
20.2 years ago Arne.Muller@aventis.com ▴ 620
0
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0
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847
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gcrma and justRMA
vsn gcrma vsn gcrma
20.2 years ago Arne.Muller@aventis.com ▴ 620
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0
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2.3k
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Answer: A: how deal with multiplicate affy probes?
20.2 years ago Arne.Muller@aventis.com ▴ 620
0
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0
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1.1k
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Answer: A: justGCRMA normalisation options?
20.2 years ago Arne.Muller@aventis.com ▴ 620
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0
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1.6k
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Answer: A: Quantile normalization vs. data distributions
20.3 years ago Arne.Muller@aventis.com ▴ 620
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3
replies
1.4k
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utils required for EBarrays
EBarrays EBarrays
updated 20.3 years ago by ▴ 680 • written 20.3 years ago by ▴ 620
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0
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1.2k
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Answer: A: when do linear models work?
20.3 years ago Arne.Muller@aventis.com ▴ 620
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3
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1.2k
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when do linear models work?
DOSE DOSE
20.3 years ago Arne.Muller@aventis.com ▴ 620
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1
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2.1k
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Answer: A: select top genes based on p-value in limma
20.3 years ago Arne.Muller@aventis.com ▴ 620
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4
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2.2k
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RMA and quantile normalisation
probe probe
updated 20.3 years ago by ▴ 50 • written 20.3 years ago by ▴ 620
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2
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2.2k
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Answer: A: RMA and quantile normalisation
20.3 years ago Arne.Muller@aventis.com ▴ 620
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0
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1.2k
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AffyPLM
affyPLM affyPLM
20.3 years ago Arne.Muller@aventis.com ▴ 620
0
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0
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931
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Quantile Normalization on mice data
Normalization Clustering probe affyPLM Normalization Clustering probe affyPLM
20.3 years ago Arne.Muller@aventis.com ▴ 620
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