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reference manual
13.7 years ago Naomi Altman ★ 6.0k
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Answer: A: Limma, eBayes different sample size of groups and adjustment
13.7 years ago Naomi Altman ★ 6.0k
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1.1k
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Comment: C: what to do with microarray outliers?
13.7 years ago Naomi Altman ★ 6.0k
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Comment: C: limma
13.7 years ago Naomi Altman ★ 6.0k
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4
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1.6k
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Using DESeq or EdgeR for Exon Differential Expression Analysis
Normalization edgeR DESeq Normalization edgeR DESeq
updated 13.8 years ago by ▴ 30 • written 13.8 years ago by ★ 6.0k
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goseq: gene universe
GOstats goseq GOstats goseq
updated 13.8 years ago by ★ 2.0k • written 13.8 years ago by ★ 6.0k
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2.9k
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Answer: A: goseq problem
13.8 years ago Naomi Altman ★ 6.0k
1
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1
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2.9k
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goseq problem
edgeR goseq edgeR goseq
13.8 years ago Naomi Altman ★ 6.0k
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1
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930
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Answer: A: Separate channel analysis on connected design
13.8 years ago Naomi Altman ★ 6.0k
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3
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1.9k
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edgeR: calcNormFactors
updated 13.8 years ago by ▴ 160 • written 13.8 years ago by ★ 6.0k
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3.2k
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Answer: A: How to model.matrix and makeContrasts for several groups with multiple treatment
13.8 years ago Naomi Altman ★ 6.0k
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1.9k
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Comment: C: edgeR: calcNormFactors
13.8 years ago Naomi Altman ★ 6.0k
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3
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1.2k
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Please advice
Microarray GO limma Microarray GO limma
updated 13.8 years ago by ▴ 370 • written 13.8 years ago by ★ 6.0k
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1
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1.2k
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Answer: A: Please advice
13.8 years ago Naomi Altman ★ 6.0k
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0
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2.7k
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Answer: A: Problem with texi2dvi
13.8 years ago Naomi Altman ★ 6.0k
0
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0
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1.3k
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Answer: A: Question for NGS seq data (time couse)
13.8 years ago Naomi Altman ★ 6.0k
0
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1
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1.6k
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Answer: A: RNASeq, differential expression between group, and large variance within groups
13.8 years ago Naomi Altman ★ 6.0k
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0
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789
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nested effects?
13.8 years ago Naomi Altman ★ 6.0k
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0
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993
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Answer: A: intraspotCorrelation vs duplicateCorrelation
13.9 years ago Naomi Altman ★ 6.0k
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0
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699
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intraspotCorrelation vs duplicateCorrelation
13.9 years ago Naomi Altman ★ 6.0k
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1.2k
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Comment: C: converting probe to gene level
14.0 years ago Naomi Altman ★ 6.0k
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2.6k
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Answer: A: Regression using LIMMA
14.2 years ago Naomi Altman ★ 6.0k
3
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2.4k
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Answer: A: limma for spectral counts
14.2 years ago Naomi Altman ★ 6.0k
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0
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990
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Several faculty positions in Statistics and Bioinformatics at Penn State
GO GO
14.3 years ago Naomi Altman ★ 6.0k
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0
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1.4k
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Answer: A: Bootstrapping paired samples and tiny groups
14.3 years ago Naomi Altman ★ 6.0k
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0
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728
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Using linear models to find differential gene expression (NGS)
14.4 years ago Naomi Altman ★ 6.0k
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0
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1.5k
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Answer: A: post-hoc test after F-test in Limma
14.4 years ago Naomi Altman ★ 6.0k
2
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1
reply
903
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Five variables, ABCDE, how to check whether (A-B)/(A-C) is equal to D/E?
updated 14.4 years ago by ▴ 60 • written 14.4 years ago by ★ 6.0k
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0
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1.1k
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Answer: A: Fisher-test
14.4 years ago Naomi Altman ★ 6.0k
0
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0
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1.5k
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Answer: A: DESeq question correlation
14.4 years ago Naomi Altman ★ 6.0k
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2
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3.9k
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Comment: C: removal of genes with low expression values
14.5 years ago Naomi Altman ★ 6.0k
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0
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1.3k
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P>1 (edgeR and sage.test)
SAGE qvalue SAGE qvalue
14.5 years ago Naomi Altman ★ 6.0k
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1
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3.2k
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Answer: A: edgeR normalization factors
14.5 years ago Naomi Altman ★ 6.0k
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0
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3.2k
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Answer: A: edgeR normalization factors
14.5 years ago Naomi Altman ★ 6.0k
0
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1
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3.2k
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Answer: A: edgeR normalization factors
14.5 years ago Naomi Altman ★ 6.0k
0
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0
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1.8k
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Which package for gene expression correlation analysis
Cancer affy Cancer affy
14.5 years ago Naomi Altman ★ 6.0k
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1
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1.6k
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Comment: C: edgeR question
14.5 years ago Naomi Altman ★ 6.0k
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1
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1.6k
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Comment: C: edgeR question
14.5 years ago Naomi Altman ★ 6.0k
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0
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1.6k
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Answer: A: edgeR question
14.5 years ago Naomi Altman ★ 6.0k
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1
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1.6k
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Comment: C: edgeR: a question about library size
14.6 years ago Naomi Altman ★ 6.0k
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0
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3.7k
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Comment: C: DESeq and number of replicates required for RNA-Seq
14.6 years ago Naomi Altman ★ 6.0k
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0
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3.7k
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Answer: A: DESeq and number of replicates required for RNA-Seq
14.6 years ago Naomi Altman ★ 6.0k
0
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1
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3.7k
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Answer: A: DESeq and number of replicates required for RNA-Seq
14.6 years ago Naomi Altman ★ 6.0k
0
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1
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3.7k
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Answer: A: DESeq and number of replicates required for RNA-Seq
14.6 years ago Naomi Altman ★ 6.0k
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0
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1.2k
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Comment: C: Bayseq vignette is missing
14.6 years ago Naomi Altman ★ 6.0k
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2
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1.2k
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Bayseq vignette is missing
baySeq baySeq
updated 14.6 years ago by ▴ 580 • written 14.6 years ago by ★ 6.0k
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0
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1.7k
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Answer: A: Limma -time course - no replicates
14.6 years ago Naomi Altman ★ 6.0k
0
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1
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1.7k
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Answer: A: Limma -time course - no replicates
14.6 years ago Naomi Altman ★ 6.0k
0
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1
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1.7k
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Answer: A: Limma -time course - no replicates
14.6 years ago Naomi Altman ★ 6.0k
0
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1
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1.1k
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hexplom error
updated 14.6 years ago by ▴ 220 • written 14.6 years ago by ★ 6.0k
601 results • Page 2 of 13
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