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dispersion in edgeR
Sequencing edgeR Sequencing edgeR
updated 2.6 years ago by 52k • written 14.5 years ago by ★ 6.0k
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Comment: Comment: Sample quality weights for RNA-seq
3.7 years ago Naomi Altman ★ 6.0k
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6
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1.7k
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Sample quality weights for RNA-seq
DESeq2 limma weight
3.7 years ago Naomi Altman ★ 6.0k
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1.7k
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Comment: Comment: Sample quality weights for RNA-seq
3.7 years ago Naomi Altman ★ 6.0k
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1
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1.7k
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Comment: Comment: Sample quality weights for RNA-seq
3.7 years ago Naomi Altman ★ 6.0k
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2
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2.2k
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Getting annotation into GOstat
Transcription Transcription
updated 6.9 years ago by • 0 • written 12.2 years ago by ★ 6.0k
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1
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3.0k
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Comment: C: edgeR multiple contrasts Vs. One test
updated 7.1 years ago by 52k • written 11.5 years ago by ★ 6.0k
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5
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4.8k
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unable to install biocLite or BiocInstaller
updated 9.2 years ago by • 0 • written 11.0 years ago by ★ 6.0k
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1
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2.1k
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Comment: C: GWAS with family data
10.7 years ago Naomi Altman ★ 6.0k
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0
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1.5k
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Comment: C: GWASdata
10.7 years ago Naomi Altman ★ 6.0k
0
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4
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2.1k
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GWAS with family data
updated 10.7 years ago by ★ 1.3k • written 10.7 years ago by ★ 6.0k
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4
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1.5k
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GWASdata
SNP affy SNP affy
10.7 years ago Naomi Altman ★ 6.0k
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1
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1.5k
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Answer: A: GWASdata
10.7 years ago Naomi Altman ★ 6.0k
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1
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2.2k
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Comment: C: biocLite installing to tmp directory
10.7 years ago Naomi Altman ★ 6.0k
1
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3
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2.2k
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biocLite installing to tmp directory
updated 10.7 years ago by 67k • written 10.7 years ago by ★ 6.0k
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3
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1.5k
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DiffBind counts
DiffBind DiffBind
updated 10.7 years ago by ★ 5.2k • written 10.8 years ago by ★ 6.0k
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1.5k
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Comment: C: DiffBind counts
10.8 years ago Naomi Altman ★ 6.0k
1
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1
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1.3k
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matching Entrez-IDs to Affy probesets using biomaRt
biomaRt biomaRt
updated 10.8 years ago by ★ 7.2k • written 10.8 years ago by ★ 6.0k
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2
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1.0k
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biomaRt and rma
biomaRt biomaRt
updated 10.8 years ago by 67k • written 10.8 years ago by ★ 6.0k
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0
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1.0k
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Answer: A: biomaRt and rma
10.8 years ago Naomi Altman ★ 6.0k
0
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0
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4.8k
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Comment: C: unable to install biocLite or BiocInstaller
11.0 years ago Naomi Altman ★ 6.0k
0
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0
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1.3k
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Comment: C: technical + biological replicate design for multiple categories
11.5 years ago Naomi Altman ★ 6.0k
0
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0
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966
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Answer: A: What is the FDR set to for the BH method.
11.5 years ago Naomi Altman ★ 6.0k
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0
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1.3k
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Answer: A: technical + biological replicate design for multiple categories
11.5 years ago Naomi Altman ★ 6.0k
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0
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1.7k
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Answer: A: Different number of differentially expressed genes after using ComBat in 'sva' f
11.6 years ago Naomi Altman ★ 6.0k
0
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2
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969
views
qvalue pi0 computation
updated 11.9 years ago by 67k • written 11.9 years ago by ★ 6.0k
0
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1
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900
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Creating annotation database for GOstat
Annotation GO Annotation GO
updated 11.9 years ago by 67k • written 11.9 years ago by ★ 6.0k
0
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1
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1.4k
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Comment: C: Limma analyses;paired and/or factorial design?
12.7 years ago Naomi Altman ★ 6.0k
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1
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1.3k
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Answer: A: Limma and negative p-values
12.8 years ago Naomi Altman ★ 6.0k
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1
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2.2k
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Answer: A: fisher exact test pairwise comparisons
12.8 years ago Naomi Altman ★ 6.0k
0
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0
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1.5k
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Answer: A: error in using random forest
12.8 years ago Naomi Altman ★ 6.0k
0
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0
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1.5k
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Comment: C: error in using random forest
12.8 years ago Naomi Altman ★ 6.0k
0
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0
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1.4k
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Answer: A: DEseq
12.9 years ago Naomi Altman ★ 6.0k
0
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1
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939
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Answer: A: Two populations on microarray
12.9 years ago Naomi Altman ★ 6.0k
0
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1
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1.2k
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Answer: A: Separating channels of a two-color microarray
12.9 years ago Naomi Altman ★ 6.0k
0
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2
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1.5k
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Comment: C: Limma question_Intra-Spot Correlation Question
12.9 years ago Naomi Altman ★ 6.0k
0
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0
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1.1k
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Comment: C: Two populations on microarray
13.0 years ago Naomi Altman ★ 6.0k
0
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0
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1.1k
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Comment: C: Two populations on microarray
13.0 years ago Naomi Altman ★ 6.0k
0
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1
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1.1k
views
Answer: A: edgeR on differentially expressed genes with low read counts
13.1 years ago Naomi Altman ★ 6.0k
0
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0
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8.4k
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Answer: A: DESeq adjusted pvalue calculation / filtering data
13.1 years ago Naomi Altman ★ 6.0k
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0
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808
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Comment: C: density plot of pm values
13.1 years ago Naomi Altman ★ 6.0k
0
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1
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8.4k
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Comment: C: DESeq adjusted pvalue calculation / filtering data
13.1 years ago Naomi Altman ★ 6.0k
0
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0
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975
views
Faculty position at Penn State (Bioinformatics and/or Statistics)
13.2 years ago Naomi Altman ★ 6.0k
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0
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1.7k
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Answer: A: Clustering of 30,000+ genes
13.3 years ago Naomi Altman ★ 6.0k
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0
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975
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Answer: A: negative correlation?
13.5 years ago Naomi Altman ★ 6.0k
0
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1
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975
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negative correlation?
limma limma
13.5 years ago Naomi Altman ★ 6.0k
0
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1
reply
829
views
biocLite and limma
limma limma
updated 13.5 years ago by 67k • written 13.5 years ago by ★ 6.0k
0
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1
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1.1k
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Answer: A: about limma linear models
13.6 years ago Naomi Altman ★ 6.0k
1
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0
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9.8k
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Answer: A: coefficient not estimable (limma warning)
13.7 years ago Naomi Altman ★ 6.0k
0
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0
replies
638
views
more on reference manual
13.7 years ago Naomi Altman ★ 6.0k
601 results • Page 1 of 13
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