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Rsubread package not available?
Rsubread BiocInstaller
updated 5.6 years ago by 52k • written 13.4 years ago by ▴ 410
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Comment: C: Trouble creating a ShortReadQ object and using writeFastq
12.2 years ago Noah Dowell ▴ 410
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Sorry for cross post: Trouble creating ShortReadQ object and using writeFastq
Preprocessing ShortRead Preprocessing ShortRead
12.2 years ago Noah Dowell ▴ 410
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Trouble creating a ShortReadQ object and using writeFastq
Preprocessing ShortRead Preprocessing ShortRead
updated 12.2 years ago by 25k • written 12.2 years ago by ▴ 410
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5.8k
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Comment: C: Rsubread package not available? Warning resolved
updated 13.4 years ago by 52k • written 13.4 years ago by ▴ 410
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5.8k
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Comment: C: Rsubread package not available? Warning resolved
updated 13.4 years ago by 52k • written 13.4 years ago by ▴ 410
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Answer: A: problem using affxparser on MacOSX
13.4 years ago Noah Dowell ▴ 410
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Comment: C: problem using affxparser on MacOSX
13.4 years ago Noah Dowell ▴ 410
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Comment: C: readCelFile function in Starr is crashing R
13.4 years ago Noah Dowell ▴ 410
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Answer: A: Extracting top upregulated genes from Limma analysis
14.1 years ago Noah Dowell ▴ 410
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Comment: C: How Does one subset a XStringView or PDict object?
14.2 years ago Noah Dowell ▴ 410
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How Does one subset a XStringView or PDict object?
Transcription BSgenome Biostrings BSgenome Transcription BSgenome Biostrings BSgenome
updated 14.2 years ago by 25k • written 14.2 years ago by ▴ 410
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How do I use biomaRt to get upstreamFlank Genomic Sequence for many Genomes?
Alignment biomaRt genomes Alignment biomaRt genomes
14.3 years ago Noah Dowell ▴ 410
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Comment: C: ChIPpeakAnno venn diagram statistics
14.4 years ago Noah Dowell ▴ 410
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1.7k
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Answer: A: ChIPpeakAnno venn diagram statistics
14.4 years ago Noah Dowell ▴ 410
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2
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1.4k
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totalTest number in ChipPeakAnno
ChIPpeakAnno ChIPpeakAnno
updated 14.4 years ago by ▴ 30 • written 14.4 years ago by ▴ 410
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Answer: A: Quantile normalization in Ringo package
14.6 years ago Noah Dowell ▴ 410
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1.2k
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Answer: A: probeAnno for tilingArray package.
14.6 years ago Noah Dowell ▴ 410
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1
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1.8k
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tilingArray getting started questions
GO Yeast tilingArray Starr GO Yeast tilingArray Starr
14.6 years ago Noah Dowell ▴ 410
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1.8k
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Answer: A: tilingArray getting started questions
14.6 years ago Noah Dowell ▴ 410
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2.2k
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Question on Hypergeometric P value generated from makeVennDiagram in ChIPpeakAnno
Transcription GO ChIPpeakAnno Transcription GO ChIPpeakAnno
updated 14.7 years ago by ★ 4.3k • written 14.7 years ago by ▴ 410
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Comment: C: Question RE: getEnrichedGo in ChIPpeakAnno package
14.9 years ago Noah Dowell ▴ 410
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1
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959
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Question on makeVennDiagram function in ChIPpeakAnno
GO BSgenome BSgenome GO BSgenome BSgenome
updated 14.9 years ago by ★ 4.3k • written 14.9 years ago by ▴ 410
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994
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Tips for the findOverlappingPeaks function in ChIPpeakAnno package
IRanges IRanges
14.9 years ago Noah Dowell ▴ 410
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1.9k
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Comment: C: Question RE: getEnrichedGo in ChIPpeakAnno package
14.9 years ago Noah Dowell ▴ 410
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6
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1.9k
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Question RE: getEnrichedGo in ChIPpeakAnno package
Yeast ChIPpeakAnno Starr Yeast ChIPpeakAnno Starr
updated 14.9 years ago by ★ 4.3k • written 14.9 years ago by ▴ 410
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1.3k
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Answer: A: Reading .bpmap files for homemade tiling arrays
14.9 years ago Noah Dowell ▴ 410
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1.6k
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Answer: A: Error using getMeans function in Ringo/Starr
14.9 years ago Noah Dowell ▴ 410
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3
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1.6k
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Error using getMeans function in Ringo/Starr
Yeast probe Ringo Yeast probe Ringo
15.0 years ago • updated 14.9 years ago Noah Dowell ▴ 410
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1.6k
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Comment: C: Error using getMeans function in Ringo/Starr
15.0 years ago Noah Dowell ▴ 410
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2
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1.3k
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vennDiagram Statistics Advice
Microarray limma Microarray limma
updated 15.0 years ago by ★ 13k • written 15.0 years ago by ▴ 410
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1.3k
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Comment: C: vennDiagram Statistics Advice
15.0 years ago Noah Dowell ▴ 410
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2.0k
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Answer: A: chip-chip data
15.1 years ago Noah Dowell ▴ 410
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2.0k
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Answer: A: chip-chip data
15.1 years ago Noah Dowell ▴ 410
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1.2k
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Answer: A: Reading xls affymetrix file?
15.2 years ago Noah Dowell ▴ 410
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0
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1.1k
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Ringo/Starr genomeAnno Object Tips
Annotation biomaRt Ringo Annotation biomaRt Ringo
15.3 years ago Noah Dowell ▴ 410
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1
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1.1k
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Ringo/Starr getProfiles function
Annotation Starr Annotation Starr
updated 15.4 years ago by ▴ 50 • written 15.4 years ago by ▴ 410
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1
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1.1k
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Ringo/Starr getProfiles function
biomaRt Ringo Starr biomaRt Ringo Starr
updated 15.4 years ago by ★ 13k • written 15.4 years ago by ▴ 410
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1
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969
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Please Help with Starr Package
Normalization Starr Normalization Starr
updated 15.4 years ago by 25k • written 15.4 years ago by ▴ 410
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1
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1.3k
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Please Help with rMAT: NAs in Enrich Object
Normalization Preprocessing rtracklayer IRanges rMAT Normalization Preprocessing IRanges
updated 15.4 years ago by 25k • written 15.4 years ago by ▴ 410
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1
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1.4k
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Help with Oligo Package: Extracting and Graphing
Transcription Normalization Yeast probe affy graph tilingArray oligo pdInfoBuilder Starr
updated 15.4 years ago by ▴ 430 • written 15.4 years ago by ▴ 410
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