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Comment: Comment: Why do I obtain Identical Adj.P value when running edgeR ?
12 months ago Mohamed ▴ 30
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5
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909
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Why do I obtain Identical Adj.P value when running edgeR ?
edgeR
updated 12 months ago by 51k • written 12 months ago by ▴ 30
0
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0
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909
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Comment: Comment: Why do I obtain Identical Adj.P value when running edgeR ?
12 months ago Mohamed ▴ 30
0
votes
0
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535
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Try to understand better how to set out an effective sample size within the MetagenomSeq package in microbiome ?
Metagenomics metagenomeSeq microbiome phyloseq microbiomeDataSets
13 months ago Mohamed ▴ 30
0
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1
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1.8k
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Confused about understanding the output and statistics of BAM file after STAR aligning
RNAseq123 VariantFiltering Alignment VariantAnnotation
updated 23 months ago by 67k • written 23 months ago by ▴ 30
0
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1
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2.4k
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Comment: Comment: Error when annotating ENSEMBLE transcript IDs from chicken annotation DB
23 months ago Mohamed ▴ 30
0
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1
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2.4k
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Comment: Comment: Error when annotating ENSEMBLE transcript IDs from chicken annotation DB
23 months ago Mohamed ▴ 30
0
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5
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2.4k
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Error when annotating ENSEMBLE transcript IDs from chicken annotation DB
R ensembldb Annotation
updated 23 months ago by ★ 4.1k • written 23 months ago by ▴ 30
1
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1
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873
views
Confused about design for RNA seq experiment
RNAseq ExperimentData RNAseq123 RNA ExperimentalDesign
updated 2.0 years ago by ★ 4.4k • written 2.0 years ago by ▴ 30
2
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2
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1.0k
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Error when trying to run uniport.ws ?
UniProt.ws
updated 2.1 years ago by 4.0k • written 2.1 years ago by ▴ 30
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0
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675
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Plotting a line plot for genes across 4-species
RNAseq123
2.2 years ago Mohamed ▴ 30
0
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0
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17k
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Comment: Comment: Confused about the CPM and TMM normalization in edgeR
2.2 years ago Mohamed ▴ 30
0
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1
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17k
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Comment: Comment: Confused about the CPM and TMM normalization in edgeR
2.2 years ago Mohamed ▴ 30
5
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8
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17k
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Confused about the CPM and TMM normalization in edgeR
RNASeq R edgeR
updated 7 weeks ago by ▴ 50 • written 2.2 years ago by ▴ 30
0
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1
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17k
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Comment: Comment: Confused about the CPM and TMM normalization in edgeR
2.2 years ago Mohamed ▴ 30
0
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0
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2.6k
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Comment: Comment: Confused about using RUVg in getting negative control genes using RUVg
2.3 years ago Mohamed ▴ 30
0
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0
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2.3k
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Comment: Comment: How to determine a set of empirical control 'genes' using RUVSeq
2.3 years ago Mohamed ▴ 30
0
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4
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2.6k
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Confused about using RUVg in getting negative control genes using RUVg
RUVnormalize R edgeR RUVSeq RUVnormalizeData
2.3 years ago Mohamed ▴ 30
0
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0
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2.6k
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Answer: Answer: Confused about using RUVg in getting negative control genes using RUVg
2.3 years ago Mohamed ▴ 30
0
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1
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2.2k
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Comment: Comment: Confused about the design matrix in edgeR: How to tell R to consider one level a
2.3 years ago Mohamed ▴ 30
2
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3
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2.2k
views
Confused about the design matrix in edgeR: How to tell R to consider one level as a reference and the other is a treatment to be compared to that ref.
R edgeR
updated 2.3 years ago by 51k • written 2.3 years ago by ▴ 30
0
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0
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2.3k
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Comment: Comment: Advice on designing an EdgeR object in complex experimental setup ?
2.4 years ago Mohamed ▴ 30
0
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1
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2.3k
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Comment: Comment: Advice on designing an EdgeR object in complex experimental setup ?
2.4 years ago Mohamed ▴ 30
0
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1
reply
1.3k
views
How to directly decet the outlier samples (libraries) in EdgeR pipeline
edgeR
updated 2.4 years ago by 51k • written 2.4 years ago by ▴ 30
0
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1
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2.3k
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Comment: Comment: Advice on designing an EdgeR object in complex experimental setup ?
2.4 years ago Mohamed ▴ 30
0
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0
replies
2.3k
views
Comment: Comment: Advice on designing an EdgeR object in complex experimental setup ?
2.4 years ago Mohamed ▴ 30
0
votes
2
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2.3k
views
Comment: Comment: Advice on designing an EdgeR object in complex experimental setup ?
2.4 years ago Mohamed ▴ 30
0
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11
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2.3k
views
Advice on designing an EdgeR object in complex experimental setup ?
rRDPData r
2.4 years ago Mohamed ▴ 30
0
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0
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2.3k
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Comment: Comment: Advice on designing an EdgeR object in complex experimental setup ?
2.4 years ago Mohamed ▴ 30
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