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Comment: C: Convert MethyLumiSet into RGChannelSet (Illumina EPIC methylation data)
4.7 years ago Tim Triche ★ 4.2k
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2
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1.5k
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Circular dependencies between data and software packages: how best to avoid
developers bioc-devel package development circular dependencies
updated 6.2 years ago by 4.1k • written 6.3 years ago by ★ 4.2k
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0
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1.5k
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Answer: A: Circular dependencies between data and software packages: how best to avoid
6.2 years ago Tim Triche ★ 4.2k
0
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1
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2.4k
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Comment: C: ChAMP Normalization on EPIC Methylation Data
6.3 years ago Tim Triche ★ 4.2k
0
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7
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2.7k
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ExperimentHub wackiness (which breaks packages that depend upon experimentHub-provided *data pkgs)
experimenthub
updated 6.4 years ago by 25k • written 6.4 years ago by ★ 4.2k
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2.7k
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Comment: C: ExperimentHub wackiness (which breaks packages that depend upon experimentHub-pr
6.4 years ago Tim Triche ★ 4.2k
0
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1
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807
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Fast callback functions for scanTabix?
tabix
updated 6.7 years ago by 25k • written 6.7 years ago by ★ 4.2k
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0
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4.9k
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Comment: C: Illumina MethylationEPIC vs. 450K
8.3 years ago Tim Triche ★ 4.2k
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5
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2.5k
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bigBed support in rtracklayer
rtracklayer rtracklayer
updated 8.6 years ago by ▴ 30 • written 12.1 years ago by ★ 4.2k
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0
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4.4k
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Comment: C: Removing sex-chromosome probes from methyLumiSet
updated 9.5 years ago by ★ 8.2k • written 9.5 years ago by ★ 4.2k
0
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1
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4.4k
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Comment: C: Removing sex-chromosome probes from methyLumiSet
9.5 years ago Tim Triche ★ 4.2k
0
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0
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4.4k
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Comment: C: Removing sex-chromosome probes from methyLumiSet
9.5 years ago Tim Triche ★ 4.2k
0
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1
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3.2k
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Answer: A: non-integer counts for edgeR
updated 9.7 years ago by 52k • written 12.6 years ago by ★ 4.2k
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0
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3.4k
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Comment: C: Annotation DB for ArrayStar lncRNA arrays
9.8 years ago Tim Triche ★ 4.2k
0
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1
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3.0k
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Comment: C: frma vectors for GPL13158 (Affymetrix HT HG-U133+ PM Array Plate)?
9.9 years ago Tim Triche ★ 4.2k
0
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0
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1.4k
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Comment: C: How many arrays are "enough" for creating useful fRMA vectors?
10.1 years ago Tim Triche ★ 4.2k
0
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2
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1.4k
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How many arrays are "enough" for creating useful fRMA vectors?
annotation frma frmatools
updated 10.1 years ago by ▴ 830 • written 10.1 years ago by ★ 4.2k
2
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5
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2.6k
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"My tags" -- how to actually watch/follow a tag
faq
10.1 years ago Tim Triche ★ 4.2k
0
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2
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2.6k
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Answer: A: "My tags" -- how to actually watch/follow a tag
10.1 years ago Tim Triche ★ 4.2k
0
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0
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2.5k
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Answer: A: IlluminaHumanMethylation450k.db has undeclared dependency on AnnotationForge
updated 10.3 years ago by 67k • written 10.3 years ago by ★ 4.2k
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0
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2.5k
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Answer: A: IlluminaHumanMethylation450k.db has undeclared dependency on AnnotationForge
10.3 years ago Tim Triche ★ 4.2k
0
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1
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2.6k
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Interspecies differential expression of orthologs with Edger
Transcription edgeR Transcription edgeR
10.4 years ago Tim Triche ★ 4.2k
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0
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2.6k
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Answer: A: Interspecies differential expression of orthologs with Edger
10.4 years ago Tim Triche ★ 4.2k
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0
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829
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Answer: A: Shearwater question
10.4 years ago Tim Triche ★ 4.2k
0
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0
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762
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Answer: A: Calculate the x when f(x) reaches its minimum
10.5 years ago Tim Triche ★ 4.2k
0
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1
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4.1k
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Answer: A: GRanges apply functions
10.6 years ago Tim Triche ★ 4.2k
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1
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4.1k
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Answer: A: GRanges apply functions
10.6 years ago Tim Triche ★ 4.2k
0
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0
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2.9k
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Answer: A: Displaying very deep coverage in Gviz
10.6 years ago Tim Triche ★ 4.2k
0
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0
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2.9k
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Comment: C: Adding annotations to GSE datasets
10.7 years ago Tim Triche ★ 4.2k
0
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1
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1.5k
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Answer: A: Fwd: adjusted P-values
10.7 years ago Tim Triche ★ 4.2k
0
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1
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2.5k
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Comment: C: granges() method for GenomicRanges objects akin to ranges()...
10.7 years ago Tim Triche ★ 4.2k
0
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0
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2.5k
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Comment: C: granges() method for GenomicRanges objects akin to ranges()...
10.7 years ago Tim Triche ★ 4.2k
0
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17
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2.5k
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granges() method for GenomicRanges objects akin to ranges()...
updated 10.7 years ago by ▴ 90 • written 10.7 years ago by ★ 4.2k
0
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1
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2.5k
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Comment: C: granges() method for GenomicRanges objects akin to ranges()...
10.7 years ago Tim Triche ★ 4.2k
0
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0
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1.1k
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Comment: C: Looking for a function
10.7 years ago Tim Triche ★ 4.2k
0
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1
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3.8k
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Comment: C: doParallel with Bumphunter gives Error in mcfork()
10.7 years ago Tim Triche ★ 4.2k
0
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1
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3.8k
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Answer: A: doParallel with Bumphunter gives Error in mcfork()
10.7 years ago Tim Triche ★ 4.2k
0
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1
reply
3.3k
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Comment: C: bumphunter DMRs difficulties
10.9 years ago Tim Triche ★ 4.2k
0
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2
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2.2k
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Answer: A: Coercion lumi/minfi objects
10.9 years ago Tim Triche ★ 4.2k
0
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1
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5.0k
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Answer: A: WGCNA
10.9 years ago Tim Triche ★ 4.2k
0
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0
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5.0k
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Answer: A: WGCNA
10.9 years ago Tim Triche ★ 4.2k
0
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0
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1.6k
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Answer: A: getGEO and further analyzing of data by bioconductor
10.9 years ago Tim Triche ★ 4.2k
0
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1
reply
2.2k
views
Answer: A: Coercion lumi/minfi objects
10.9 years ago Tim Triche ★ 4.2k
0
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1
reply
1.2k
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Answer: A: Can we use Intraclass correlation (ICC) to optimize clustering parameters?
10.9 years ago Tim Triche ★ 4.2k
0
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1
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1.1k
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Answer: A: cluster or pattern analysis of expression and CN data of cell lines
10.9 years ago Tim Triche ★ 4.2k
0
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3
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2.2k
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minfi release 1.8
SNP Annotation GO probe SNPlocs PROcess minfi bumphunter ChAMP SNP Annotation GO probe
updated 10.9 years ago by ▴ 20 • written 10.9 years ago by ★ 4.2k
0
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1
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4.8k
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Comment: C: limma-voom
10.9 years ago Tim Triche ★ 4.2k
0
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1
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2.2k
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Answer: A: minfi release 1.8
10.9 years ago Tim Triche ★ 4.2k
0
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1
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2.2k
views
Answer: A: bsmooth and bsseq for RRBS
11.0 years ago Tim Triche ★ 4.2k
0
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0
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1.4k
views
Answer: A: RRBS question
11.0 years ago Tim Triche ★ 4.2k
430 results • Page 1 of 9
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