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limma: writing down the matrix in an almost (?) factorial design experiment
Microarray DOSE Microarray DOSE
14.8 years ago Massimo Pinto ▴ 390
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Answer: A: limma: writing down the matrix in an almost (?) factorial design experiment
14.8 years ago Massimo Pinto ▴ 390
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1.4k
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on the meaning and value of $stdev.unscaled in a limma's lmFitted MArrayLM object
GO hgug4112a probe GO hgug4112a probe
15.0 years ago Massimo Pinto ▴ 390
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Comment: C: End of the line of GOstats: making sense of the hypergeometric test results now
15.0 years ago Massimo Pinto ▴ 390
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End of the line of GOstats: making sense of the hypergeometric test results now
GO GO
updated 15.0 years ago by 67k • written 15.0 years ago by ▴ 390
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Comment: C: comparing two or more limma::topTables - in search of a graphical tool
15.0 years ago Massimo Pinto ▴ 390
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1.1k
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comparing two or more limma::topTables - in search of a graphical tool
updated 15.0 years ago by 67k • written 15.0 years ago by ▴ 390
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error while using genefilter's nsFilter: could not find function "hgug4112a.db_dbconn"
Annotation hgug4112a Annotation hgug4112a
15.1 years ago Massimo Pinto ▴ 390
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error while using genefilter's nsFilter: could not find function "hgug4112a.db_dbconn"
hgug4112a hgug4112a
updated 15.1 years ago by ★ 5.5k • written 15.1 years ago by ▴ 390
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Comment: C: Agi4x44PreProcess 1.4.0 question: use of genes.rpt.agi() and Gene Sets
15.1 years ago Massimo Pinto ▴ 390
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Comment: C: Agi4x44PreProcess 1.4.0 question: use of genes.rpt.agi() and Gene Sets
15.1 years ago Massimo Pinto ▴ 390
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Comment: C: Agi4x44PreProcess 1.4.0 question: use of genes.rpt.agi() and Gene Sets
15.1 years ago Massimo Pinto ▴ 390
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Comment: C: an apparently strange case of 'Warning: number of items to replace is not a mult
15.1 years ago Massimo Pinto ▴ 390
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2.1k
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Agi4x44PreProcess 1.4.0 question: use of genes.rpt.agi() and Gene Sets
hgug4112a hgug4112a
updated 15.1 years ago by ★ 1.3k • written 15.1 years ago by ▴ 390
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an apparently strange case of 'Warning: number of items to replace is not a multiple of replacement length'
GO hgug4112a GO hgug4112a
updated 15.1 years ago by 67k • written 15.1 years ago by ▴ 390
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From a list of annotated interesting genes to a list of GO's 'interesting' Biological Processes
GOstats GOstats
15.3 years ago Massimo Pinto ▴ 390
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Comment: C: Two interaction coefficients not estimable in limma's lmFit() in a 2^3 factorial
15.3 years ago Massimo Pinto ▴ 390
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Comment: C: Two interaction coefficients not estimable in limma's lmFit() in a 2^3 factorial
15.3 years ago Massimo Pinto ▴ 390
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Two interaction coefficients not estimable in limma's lmFit() in a 2^3 factorial design - does this change my contrast matrix now?
limma limma
updated 15.3 years ago by 67k • written 15.3 years ago by ▴ 390
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904
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Agi4x44PreProcess probe summarization bug?
updated 15.3 years ago by ▴ 430 • written 15.3 years ago by ▴ 390
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build.mappings() from Agi4x44PreProcess is not helping me today
GO GUI hgug4112a limma PROcess Agi4x44PreProcess GO GUI hgug4112a limma PROcess
15.4 years ago Massimo Pinto ▴ 390
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Comment: C: PreProcess and Limma 'done'. What directions now?
15.5 years ago Massimo Pinto ▴ 390
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1
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2.0k
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Comment: C: PreProcess and Limma 'done'. What directions now?
15.5 years ago Massimo Pinto ▴ 390
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2.0k
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Comment: C: PreProcess and Limma 'done'. What directions now?
15.5 years ago Massimo Pinto ▴ 390
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2.0k
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Comment: C: PreProcess and Limma 'done'. What directions now?
15.5 years ago Massimo Pinto ▴ 390
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8
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2.0k
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PreProcess and Limma 'done'. What directions now?
goProfiles goProfiles
updated 15.5 years ago by ★ 13k • written 15.5 years ago by ▴ 390
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Comment: C: One-color spotted microarrays analysis
15.5 years ago Massimo Pinto ▴ 390
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Answer: A: One-color spotted microarrays analysis
15.5 years ago Massimo Pinto ▴ 390
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Comment: C: limma and matrix design for single channel arrays - in search of a primer.
15.5 years ago Massimo Pinto ▴ 390
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2
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1.1k
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limma and matrix design for single channel arrays - in search of a primer.
Microarray limma Agi4x44PreProcess Microarray limma Agi4x44PreProcess
updated 15.5 years ago by 67k • written 15.5 years ago by ▴ 390
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1.2k
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Comment: C: read.targets() in the Agi4x44PreProcess package
15.6 years ago Massimo Pinto ▴ 390
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1.2k
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Comment: C: read.targets() in the Agi4x44PreProcess package
15.6 years ago Massimo Pinto ▴ 390
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3
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1.2k
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read.targets() in the Agi4x44PreProcess package
Agi4x44PreProcess Agi4x44PreProcess
updated 15.6 years ago by ▴ 120 • written 15.6 years ago by ▴ 390
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1.3k
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Comment: C: Agi4x44PreProcess: filtration of probes using filter.probes() returns an empty R
15.6 years ago Massimo Pinto ▴ 390
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3
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1.3k
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Agi4x44PreProcess: filtration of probes using filter.probes() returns an empty RGList (re-posted, due to earlier post failure)
Agi4x44PreProcess Agi4x44PreProcess
updated 15.6 years ago by ▴ 120 • written 15.6 years ago by ▴ 390
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Agi4x44PreProcess: filtration of probes using filter.probes() returns an empty RGList.
Agi4x44PreProcess Agi4x44PreProcess
15.6 years ago Massimo Pinto ▴ 390
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2.4k
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Comment: C: error while loading the genefilter package [R 2.8.1. on Mac OSX 10.5.6]
15.6 years ago Massimo Pinto ▴ 390
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4
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2.4k
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error while loading the genefilter package [R 2.8.1. on Mac OSX 10.5.6]
genefilter genefilter
updated 15.6 years ago by ★ 1.6k • written 15.6 years ago by ▴ 390
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