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Comment: C: limma: correcting for a correlation between contrasts
updated 10.0 years ago by 51k • written 11.4 years ago by ▴ 650
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Comment: C: DEXSeq for DE of antisense transcription
10.0 years ago Alex Gutteridge ▴ 650
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DEXSeq for DE of antisense transcription
dexseq antisense
updated 10.0 years ago by ★ 13k • written 10.0 years ago by ▴ 650
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Comment: C: DEXSeq continous variable in model
10.3 years ago Alex Gutteridge ▴ 650
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DEXSeq continous variable in model
RNASeq TimeCourse timecourse DEXSeq DESeq2 RNASeq TimeCourse timecourse DEXSeq DESeq2
updated 10.3 years ago by ★ 1.9k • written 10.3 years ago by ▴ 650
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Answer: A: DEXSeq continous variable in model
10.3 years ago Alex Gutteridge ▴ 650
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1.5k
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DEXSeq continous variable in model
RNASeq GO DEXSeq DESeq2 RNASeq GO DEXSeq DESeq2
10.3 years ago Alex Gutteridge ▴ 650
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Comment: C: RRBS question
10.8 years ago Alex Gutteridge ▴ 650
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1.4k
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RRBS question
updated 10.8 years ago by ★ 4.2k • written 10.8 years ago by ▴ 650
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Answer: A: plot methylation figure for end analysis
11.2 years ago Alex Gutteridge ▴ 650
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1.5k
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limma: correcting for a correlation between contrasts
limma limma
updated 11.4 years ago by 51k • written 11.4 years ago by ▴ 650
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853
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Semantics of GenomicRanges gaps()
GenomicRanges GenomicRanges
11.5 years ago Alex Gutteridge ▴ 650
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Comment: C: bsseq and BSmooth with RRBS
11.8 years ago Alex Gutteridge ▴ 650
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2.2k
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bsseq and BSmooth with RRBS
Sequencing bsseq Sequencing bsseq
updated 11.8 years ago by ★ 6.5k • written 11.8 years ago by ▴ 650
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Comment: C: Fwd: statistical test for time course data
11.8 years ago Alex Gutteridge ▴ 650
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2.5k
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Comment: C: Getting counts for previously undetected transcripts and genes with easyRNASeq:
11.9 years ago Alex Gutteridge ▴ 650
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1.3k
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Comment: C: weired bayseq results
12.0 years ago Alex Gutteridge ▴ 650
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2.6k
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Answer: A: Introns in exons and vice versa (Genomic Features)
12.1 years ago Alex Gutteridge ▴ 650
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1.4k
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Comment: C: Advice on experimental setup
12.2 years ago Alex Gutteridge ▴ 650
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1.4k
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Answer: A: Advice on experimental setup
12.2 years ago Alex Gutteridge ▴ 650
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1.8k
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Comment: C: Gene enrichment question
12.3 years ago Alex Gutteridge ▴ 650
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Comment: C: extracting specific columns in R
12.3 years ago Alex Gutteridge ▴ 650
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Comment: C: Visualizing the region of classification uncertainty on thresholded images
12.3 years ago Alex Gutteridge ▴ 650
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Answer: A: Visualizing the region of classification uncertainty on thresholded images
12.3 years ago Alex Gutteridge ▴ 650
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1
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1.2k
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Rsamtools: Read a bam line by line
GO Rsamtools GO Rsamtools
updated 12.4 years ago by 25k • written 12.4 years ago by ▴ 650
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3.0k
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Comment: C: LIMMA decideTests result zero from contrast matrix
12.5 years ago Alex Gutteridge ▴ 650
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1.1k
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Comment: C: Odd behaviour with renameSeqlevels
12.6 years ago Alex Gutteridge ▴ 650
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3
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1.1k
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Odd behaviour with renameSeqlevels
updated 12.6 years ago by ★ 6.8k • written 12.6 years ago by ▴ 650
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Comment: C: problems with strand in predictCoding
12.6 years ago Alex Gutteridge ▴ 650
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1.4k
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Comment: C: Complementing alleles in a VCF
12.6 years ago Alex Gutteridge ▴ 650
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1.4k
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Complementing alleles in a VCF
VariantAnnotation BSgenome BSgenome genomes VariantAnnotation VariantAnnotation BSgenome
updated 12.6 years ago by 25k • written 12.6 years ago by ▴ 650
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Comment: C: Finding coding SNPs with predictCoding
12.6 years ago Alex Gutteridge ▴ 650
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Comment: C: how to make line graph
12.7 years ago Alex Gutteridge ▴ 650
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1.5k
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Comment: C: Finding coding SNPs with predictCoding
12.7 years ago Alex Gutteridge ▴ 650
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1.5k
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Answer: A: Finding coding SNPs with predictCoding
12.7 years ago Alex Gutteridge ▴ 650
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1.3k
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dbSNP strand information
SNPlocs safe SNPlocs safe
12.7 years ago Alex Gutteridge ▴ 650
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3
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1.6k
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Strand information for dbSNP packages
SNPlocs safe SNPlocs safe
updated 12.7 years ago by ★ 6.8k • written 12.7 years ago by ▴ 650
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4
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1.6k
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Finding coding SNPs with predictCoding
SNP VariantAnnotation BSgenome SNPlocs BSgenome VariantAnnotation SNP VariantAnnotation
updated 12.7 years ago by ★ 6.8k • written 12.8 years ago by ▴ 650
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1.9k
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Comment: C: Help with promoter analysis
12.7 years ago Alex Gutteridge ▴ 650
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1
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1.9k
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Answer: A: Help with promoter analysis
12.7 years ago Alex Gutteridge ▴ 650
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1
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1.6k
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Comment: C: Finding coding SNPs with predictCoding
12.8 years ago Alex Gutteridge ▴ 650
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1.1k
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Answer: A: Problem with limma's topTable lfc filter when more than 1 contrast is in output
12.8 years ago Alex Gutteridge ▴ 650
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2.3k
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Answer: A: collapseRows function
13.2 years ago Alex Gutteridge ▴ 650
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2.3k
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Answer: A: collapseRows function
13.2 years ago Alex Gutteridge ▴ 650
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1.7k
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Comment: C: ShortRead error when reading BAM file
13.2 years ago Alex Gutteridge ▴ 650
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1
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1.7k
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Comment: C: ShortRead error when reading BAM file
13.2 years ago Alex Gutteridge ▴ 650
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5
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1.7k
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ShortRead error when reading BAM file
ShortRead ShortRead
updated 13.2 years ago by 25k • written 13.2 years ago by ▴ 650
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1.5k
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Answer: A: question on SPIA pavkage application
13.3 years ago Alex Gutteridge ▴ 650
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1.3k
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Answer: A: a question on SPIA package
13.3 years ago Alex Gutteridge ▴ 650
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1.3k
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Comment: C: single color using Limma : very low p-value "1.40456052121752e-60"
13.3 years ago Alex Gutteridge ▴ 650
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