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Answer: A: Using already normalized counts
5.9 years ago Steve Lianoglou ★ 13k
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1.3k
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Answer: A: Bioconductor support site search missing results?
5.9 years ago Steve Lianoglou ★ 13k
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1.7k
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Answer: A: TCGA isoform expression quantification file - how to reshape data
5.9 years ago Steve Lianoglou ★ 13k
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1
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2.0k
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Answer: A: Number and percent of mapped reads from RNA seq analysis.
6.1 years ago Steve Lianoglou ★ 13k
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1
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2.0k
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Comment: C: How to analyze RNAseq data with multiple treatment groups and each subject has p
6.1 years ago Steve Lianoglou ★ 13k
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Job: Computational Biology / Genomics Internship at Denali Therapeutics
internship genomics genetics Job
6.2 years ago Steve Lianoglou ★ 13k
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3.5k
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Answer: A: Use of pseudoalignment estimated counmts as input to edgeR and Limma-Voom
6.2 years ago Steve Lianoglou ★ 13k
2
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1.7k
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Comment: C: newSCESet(countData=all.counts) function not working
6.2 years ago Steve Lianoglou ★ 13k
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1
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1.9k
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Comment: C: Enable copying Bioconductor AMI to new region
6.3 years ago Steve Lianoglou ★ 13k
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1
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1.9k
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Comment: C: Enable copying Bioconductor AMI to new region
6.3 years ago Steve Lianoglou ★ 13k
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1
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3.4k
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Comment: C: scRNA-seq: a question about the names of the columns in a Seurat object
6.3 years ago Steve Lianoglou ★ 13k
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1
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3.4k
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Answer: A: scRNA-seq: a question about the names of the columns in a Seurat object
6.3 years ago Steve Lianoglou ★ 13k
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2
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1.1k
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Comment: C: DESeq2: Small treatment group, large control group
6.4 years ago Steve Lianoglou ★ 13k
2
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24k
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Comment: C: Fisher test in Rna seq
6.4 years ago Steve Lianoglou ★ 13k
2
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1.3k
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Answer: A: Help for Research Proposal
6.4 years ago Steve Lianoglou ★ 13k
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1
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1.4k
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Answer: A: Get normalized COUNTS Deseq2
6.4 years ago Steve Lianoglou ★ 13k
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4.2k
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Comment: C: Data normalization and transformation using DESeq2
6.4 years ago Steve Lianoglou ★ 13k
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802
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Answer: A: DESeq2 namespace load fail
6.4 years ago Steve Lianoglou ★ 13k
3
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1
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2.0k
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Answer: A: Seurat to SingleCellExperiment Converting error in MAC
6.4 years ago Steve Lianoglou ★ 13k
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5.9k
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Comment: C: Finding DE genes from RNA-seq data
6.4 years ago Steve Lianoglou ★ 13k
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1
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1.2k
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Answer: A: TMM normalization of cancer RNA seq
6.4 years ago Steve Lianoglou ★ 13k
2
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2
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5.9k
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Answer: A: Finding DE genes from RNA-seq data
6.5 years ago Steve Lianoglou ★ 13k
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0
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1.2k
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Comment: C: Newbie to all of this
6.5 years ago Steve Lianoglou ★ 13k
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1.3k
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Answer: A: Normalization and Quality Control for Multiple scRNAseq Data Sets
6.5 years ago Steve Lianoglou ★ 13k
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0
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3.2k
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Comment: C: EdgeR vs DESeq2 with/without lfcShrink
6.6 years ago Steve Lianoglou ★ 13k
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0
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2.3k
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Comment: C: CQN offset and edgeR
6.6 years ago Steve Lianoglou ★ 13k
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0
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2.3k
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Comment: C: CQN offset and edgeR
6.6 years ago Steve Lianoglou ★ 13k
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1
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2.3k
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Answer: A: CQN offset and edgeR
6.6 years ago Steve Lianoglou ★ 13k
4
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1
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2.8k
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Answer: A: Where to download expected counts instead of normalized RSEM for TCGA LUAD?
6.7 years ago Steve Lianoglou ★ 13k
1
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1
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1.9k
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Answer: A: Difficulty extending ExpressionSet
6.7 years ago Steve Lianoglou ★ 13k
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1.2k
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Comment: C: Identify the normalized count from differential expression
6.8 years ago Steve Lianoglou ★ 13k
1
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0
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925
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Comment: C: PROBLEM WHILE IMPORTING FOR edgeR
6.8 years ago Steve Lianoglou ★ 13k
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1.9k
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Answer: A: Bioconductor 3.7 is released
7.0 years ago Steve Lianoglou ★ 13k
0
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0
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946
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Answer: A: PCA analysis in R for 780 genes in 20 samples.
7.0 years ago Steve Lianoglou ★ 13k
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4.1k
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Answer: A: featureCounts taking 4-10 hours per BAM file?
7.0 years ago Steve Lianoglou ★ 13k
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7.6k
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Comment: C: Installing an older release of Bioconductor
7.1 years ago Steve Lianoglou ★ 13k
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2.4k
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Answer: A: Can Tximport average transcript length be used for GOSeq?
7.1 years ago Steve Lianoglou ★ 13k
2
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2.3k
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Answer: A: Incredibly high/low foldChange
7.1 years ago Steve Lianoglou ★ 13k
1
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0
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1.5k
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Answer: A: voom command broken in limma_3.34.5?
7.3 years ago Steve Lianoglou ★ 13k
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1
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3.3k
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Comment: C: Limma RNA seq analysis_VOOM
7.3 years ago Steve Lianoglou ★ 13k
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1
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1.2k
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Answer: A: Does bioconductor now has microarray cross-platform merging and normalization me
7.3 years ago Steve Lianoglou ★ 13k
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1
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1.9k
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Comment: C: Unbalanced experiment with multiple samples from each patient.
7.3 years ago Steve Lianoglou ★ 13k
1
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1
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4.8k
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Answer: A: How to extract the voom normalized value for each observation?
7.4 years ago Steve Lianoglou ★ 13k
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1
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1.7k
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Comment: C: Tac and Bioconductor giving different results
7.4 years ago Steve Lianoglou ★ 13k
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1
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1.7k
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Answer: A: Tac and Bioconductor giving different results
7.4 years ago Steve Lianoglou ★ 13k
3
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6.2k
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Answer: A: Best DEG tool for datasets with FPKM counts?
7.5 years ago Steve Lianoglou ★ 13k
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0
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5.3k
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Comment: C: edgeR cpm filter
7.5 years ago Steve Lianoglou ★ 13k
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1
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5.3k
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Comment: C: edgeR cpm filter
7.5 years ago Steve Lianoglou ★ 13k
1
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1
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4.5k
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Answer: A: Add new columns to DESeqResults from text file by matching rownames.
7.5 years ago Steve Lianoglou ★ 13k
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0
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2.2k
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Comment: C: Differential expression of nomalised and log2 transformed data in limma
7.6 years ago Steve Lianoglou ★ 13k
1,506 results • Page 3 of 31
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