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Answer: Answer: How can i fix this problem in R
2.5 years ago Steve Lianoglou ★ 13k
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Comment: Comment: Help with limma contrast, difference of a difference?
2.5 years ago Steve Lianoglou ★ 13k
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2.4k
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Answer: Answer: Help with limma contrast, difference of a difference?
2.5 years ago Steve Lianoglou ★ 13k
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1.4k
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Answer: Answer: multiple annotated 3'UTR for same transcript from bioMart
2.5 years ago Steve Lianoglou ★ 13k
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2.5k
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Answer: Answer: Confused about the design matrix in edgeR: How to tell R to consider one level a
2.6 years ago Steve Lianoglou ★ 13k
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1.5k
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Comment: Comment: Which Limma guide is recommended ?
2.7 years ago Steve Lianoglou ★ 13k
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Answer: Answer: unbalanced cell count and unbalanced read count across samples in pseudobulk dif
2.7 years ago Steve Lianoglou ★ 13k
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Answer: Answer: I want to clarify difference between below two codes for analysis of DEGs. I got
2.7 years ago Steve Lianoglou ★ 13k
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3.9k
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Answer: Answer: TPM to raw counts
3.0 years ago Steve Lianoglou ★ 13k
1
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1
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2.2k
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Comment: Comment: Adjust for base line gene expression in limma model
3.0 years ago Steve Lianoglou ★ 13k
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783
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Answer: Answer: limma KNN classification with voom-transformed data
3.0 years ago Steve Lianoglou ★ 13k
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2.0k
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Comment: Comment: DEseq2 replicate normalization
3.1 years ago Steve Lianoglou ★ 13k
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1
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2.0k
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Comment: Comment: DEseq2 replicate normalization
3.1 years ago Steve Lianoglou ★ 13k
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1
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2.0k
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Answer: Answer: DEseq2 replicate normalization
3.1 years ago Steve Lianoglou ★ 13k
0
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1.2k
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Comment: Comment: Coding Style for BioC Package submissions: camelCaps or snake_case?
3.1 years ago Steve Lianoglou ★ 13k
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1.5k
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Comment: Comment: edgeR shows different results for same dataset
3.1 years ago Steve Lianoglou ★ 13k
0
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1
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1.5k
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Answer: Answer: edgeR shows different results for same dataset
3.1 years ago Steve Lianoglou ★ 13k
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1
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1.3k
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Answer: Answer: Identifying presence of certain genes
3.1 years ago Steve Lianoglou ★ 13k
0
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0
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906
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Answer: Answer: Pushing a new build of package to Bioconductor
3.3 years ago Steve Lianoglou ★ 13k
1
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0
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1.4k
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Comment: Comment: makeContrasts question
3.3 years ago Steve Lianoglou ★ 13k
1
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1
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1.3k
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Comment: Comment: Raw RNA-seq data: column names are sequences
3.3 years ago Steve Lianoglou ★ 13k
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2.8k
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Comment: Comment: Best practice for quantifying sncRNA
3.4 years ago Steve Lianoglou ★ 13k
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0
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1.8k
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Comment: Comment: Differential Expression analysis of specific list of genes
3.4 years ago Steve Lianoglou ★ 13k
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1
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1.8k
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Comment: Comment: Differential Expression analysis of specific list of genes
3.4 years ago Steve Lianoglou ★ 13k
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3.9k
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Comment: Comment: Problem with DESeq2 installation using in R 1.4.1717
3.4 years ago Steve Lianoglou ★ 13k
2
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0
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1.5k
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Answer: Answer: No counts, just fold change data
3.5 years ago Steve Lianoglou ★ 13k
0
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1
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2.5k
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Answer: Answer: CibersortX running error for Single cell-RNA
3.5 years ago Steve Lianoglou ★ 13k
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1
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2.5k
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Comment: Comment: ColData use only certain variable within
3.6 years ago Steve Lianoglou ★ 13k
1
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1
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2.5k
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Comment: Comment: ColData use only certain variable within
3.6 years ago Steve Lianoglou ★ 13k
0
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1
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6.5k
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Comment: Comment: Complexheatmap Installation Issue
4.0 years ago Steve Lianoglou ★ 13k
1
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1
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2.9k
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Answer: Answer: scuttle::aggregateAcrossCells() crashes R on large SingleCellExperiment
4.0 years ago Steve Lianoglou ★ 13k
0
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0
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1.2k
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Job: Computational Biologist at Denali Therapeutics
Transcriptomics SingleCell JobPosting
4.0 years ago Steve Lianoglou ★ 13k
1
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0
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1.8k
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Answer: Answer: Treatment AND Sex in EdgeR
4.1 years ago Steve Lianoglou ★ 13k
0
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0
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1.1k
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Comment: Comment: SUPPORT SITE UPGRADE COMPLETE
4.2 years ago Steve Lianoglou ★ 13k
0
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1
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2.0k
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Comment: C: Different geneset same p-values in topGO
4.2 years ago Steve Lianoglou ★ 13k
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1.1k
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Answer: A: edgeR and batch effects
4.3 years ago Steve Lianoglou ★ 13k
4
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2.0k
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Answer: A: Calculating standard deviation for a few genes using RNAseq data
4.3 years ago Steve Lianoglou ★ 13k
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3.1k
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Comment: C: visualize significant upregultaed genes and downregultaed genes with different c
4.3 years ago Steve Lianoglou ★ 13k
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0
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1.6k
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Comment: C: Tidyverse can be a bit tidiest to work with....
4.4 years ago Steve Lianoglou ★ 13k
0
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0
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7.1k
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Answer: A: scRNA-seq pseudo-bulk differential expression analysis with pseudobulkDGE()
4.4 years ago Steve Lianoglou ★ 13k
1
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0
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829
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Comment: C: Problem in analyzing microarray with duplicate or triplicate data
4.5 years ago Steve Lianoglou ★ 13k
0
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1
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2.6k
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Comment: C: ComplexHeatmap - R Session aborted after calling Heatmap()
4.6 years ago Steve Lianoglou ★ 13k
1
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0
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955
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Answer: A: treating RNA-seq gene expression data in cpm for edgeR
4.7 years ago Steve Lianoglou ★ 13k
1
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1
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3.9k
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Comment: C: Possible batch effect correction with RNA-Seq data when the batches do not conta
4.7 years ago Steve Lianoglou ★ 13k
1
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1
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3.9k
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Answer: A: Possible batch effect correction with RNA-Seq data when the batches do not conta
4.7 years ago Steve Lianoglou ★ 13k
1
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0
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922
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Answer: A: RNA-Seq analysis with DESeq2: showing two conditions do *not* significantly diff
4.8 years ago Steve Lianoglou ★ 13k
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919
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Comment: C: Bioc2020 - Deadline for workshops/talk/poster proposals TODAY!
4.8 years ago Steve Lianoglou ★ 13k
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1
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1.1k
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Answer: A: Any possibility to "cache" TxDb object?
4.8 years ago Steve Lianoglou ★ 13k
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1
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1.5k
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Comment: C: Weird error in Rstudio trying to retreive and load genomic data from external da
4.8 years ago Steve Lianoglou ★ 13k
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1
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1.5k
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Comment: C: Weird error in Rstudio trying to retreive and load genomic data from external da
4.8 years ago Steve Lianoglou ★ 13k
1,506 results • Page 1 of 31
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