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sampling random regions of same nucleotide composition from hg38 genome
annotatr regioneR gkmSVM
updated 10 months ago by • 0 • written 3.8 years ago by ▴ 20
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1.6k
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Comment: Comment: Accounting for Batch effect reduces DEGs drastically
10 months ago rohitsatyam102 ▴ 20
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0
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1.6k
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Comment: Comment: Accounting for Batch effect reduces DEGs drastically
11 months ago rohitsatyam102 ▴ 20
0
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0
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1.6k
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Comment: Comment: Accounting for Batch effect reduces DEGs drastically
11 months ago rohitsatyam102 ▴ 20
0
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0
replies
1.6k
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Comment: Comment: Accounting for Batch effect reduces DEGs drastically
11 months ago rohitsatyam102 ▴ 20
0
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0
replies
1.6k
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Comment: Comment: Accounting for Batch effect reduces DEGs drastically
11 months ago rohitsatyam102 ▴ 20
0
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1
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1.6k
views
Comment: Comment: Accounting for Batch effect reduces DEGs drastically
11 months ago rohitsatyam102 ▴ 20
0
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1
reply
688
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How to calculate CDS start and End per transcript from GTF file
dNdScv GenomicFeatures TxDb
11 months ago rohitsatyam102 ▴ 20
0
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0
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688
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Answer: Answer: How to calculate CDS start and End per transcript from GTF file
11 months ago rohitsatyam102 ▴ 20
2
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10
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1.6k
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Accounting for Batch effect reduces DEGs drastically
DESeq2
11 months ago • updated 10 months ago rohitsatyam102 ▴ 20
0
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1
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1.2k
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GViz plot coverage for multiple chromosome and multiple samples using BAM files and save them as a single pdf report
Gviz
2.2 years ago rohitsatyam102 ▴ 20
0
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0
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1.2k
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Answer: Answer: GViz plot coverage for multiple chromosome and multiple samples using BAM files
2.2 years ago rohitsatyam102 ▴ 20
0
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0
replies
1.0k
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Comment: Comment: Unable to convert Uniprot ID to Gene IDs using Biomart
2.2 years ago rohitsatyam102 ▴ 20
3
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2
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1.0k
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Unable to convert Uniprot ID to Gene IDs using Biomart
biomaRt
2.2 years ago rohitsatyam102 ▴ 20
0
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0
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2.1k
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Comment: Comment: Using SingleR for Single cell annotation with BulkRNASeq
2.4 years ago rohitsatyam102 ▴ 20
3
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4
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2.1k
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Using SingleR for Single cell annotation with BulkRNASeq
SingleR
2.5 years ago • updated 2.4 years ago rohitsatyam102 ▴ 20
0
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0
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1.2k
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Comment: Comment: Aberrant number of cells
2.4 years ago rohitsatyam102 ▴ 20
1
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0
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2.1k
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Answer: Answer: Using SingleR for Single cell annotation with BulkRNASeq
2.5 years ago rohitsatyam102 ▴ 20
0
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0
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2.1k
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Comment: Comment: Using SingleR for Single cell annotation with BulkRNASeq
2.5 years ago rohitsatyam102 ▴ 20
0
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1
reply
1.7k
views
Comment: Comment: How to shortlist the unaffected gene list from DESeq2 results
3.1 years ago rohitsatyam102 ▴ 20
0
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0
replies
1.9k
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Comment: Comment: Calculation of Log2 fold change in DEXSeq
3.1 years ago rohitsatyam102 ▴ 20
0
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1
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3.5k
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Comment: Comment: ntop parameter in plotPCA(). DESeq2
3.1 years ago rohitsatyam102 ▴ 20
1
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1
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1.9k
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Comment: Comment: How to calculate dispersion DESeq2 - Step by Step
3.1 years ago rohitsatyam102 ▴ 20
2
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1
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1.2k
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barcodeRanks unusual warning "In smooth.spline(x[new.keep], y[new.keep], df = df, ...)"
DropletUtils
updated 3.4 years ago by ★ 28k • written 3.4 years ago by ▴ 20
0
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1
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5.4k
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Comment: Comment: Error in conversion of SCE object to Seurat Object.
3.4 years ago rohitsatyam102 ▴ 20
0
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0
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1.2k
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Comment: Comment: Should we apply DropletUtils on control case separately or on a common sce objec
3.4 years ago rohitsatyam102 ▴ 20
2
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5
replies
5.4k
views
Error in conversion of SCE object to Seurat Object.
SingleCellExperiment
updated 3.3 years ago by ▴ 60 • written 3.4 years ago by ▴ 20
3
votes
2
replies
1.2k
views
Should we apply DropletUtils on control case separately or on a common sce object.
DropletUtils
3.4 years ago rohitsatyam102 ▴ 20
0
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1
reply
5.4k
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Comment: Comment: Error in conversion of SCE object to Seurat Object.
3.4 years ago rohitsatyam102 ▴ 20
0
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1
reply
1.7k
views
Comment: Comment: How to save multiple assays and subsequent processed data in single SummarizedEx
3.5 years ago rohitsatyam102 ▴ 20
0
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0
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1.7k
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Comment: Comment: How to save multiple assays and subsequent processed data in single SummarizedEx
3.5 years ago rohitsatyam102 ▴ 20
4
votes
4
replies
1.7k
views
How to save multiple assays and subsequent processed data in single SummarizedExperiment Object
SummarizedExperiment
updated 3.5 years ago by 1.6k • written 3.5 years ago by ▴ 20
0
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0
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4.8k
views
Comment: Comment: Convert Agilent Probe ID to gene IDs/Symbols
3.5 years ago rohitsatyam102 ▴ 20
0
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3
replies
4.8k
views
Convert Agilent Probe ID to gene IDs/Symbols
AnnotationHub biomaRt
updated 2.1 years ago by • 0 • written 3.5 years ago by ▴ 20
11
votes
13
replies
4.8k
views
How to retrieve genomic coordinates for a list of entrezID and their respective gene names
genomic AnnotationHub GenomicRanges org.Hs.eg.db
3.8 years ago • updated 3.7 years ago rohitsatyam102 ▴ 20
0
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0
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4.8k
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Answer: Answer: How to retrieve genomic coordinates for a list of entrezID and their respective
3.7 years ago rohitsatyam102 ▴ 20
0
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0
replies
5.7k
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Comment: Comment: error while installing " BSgenome.Hsapiens.UCSC.hg19"
3.7 years ago rohitsatyam102 ▴ 20
1
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2
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3.6k
views
Error while Installing BSgenome.Hsapiens.UCSC.hg38
BSgenome.Hsapiens.UCSC.hg38
updated 3.7 years ago by ▴ 10 • written 3.7 years ago by ▴ 20
0
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1
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3.6k
views
Answer: Answer: Error while Installing BSgenome.Hsapiens.UCSC.hg38
3.7 years ago rohitsatyam102 ▴ 20
0
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1
reply
4.8k
views
Comment: Comment: How to retrieve genomic coordinates for a list of entrezID and their respective
3.8 years ago rohitsatyam102 ▴ 20
0
votes
1
reply
4.8k
views
Comment: Comment: How to retrieve genomic coordinates for a list of entrezID and their respective
3.8 years ago rohitsatyam102 ▴ 20
1
vote
0
replies
1.9k
views
Comment: Comment: Understanding DESeq2 contrasts and p-values
3.8 years ago rohitsatyam102 ▴ 20
8
votes
8
replies
1.7k
views
How to shortlist the unaffected gene list from DESeq2 results
DESeq2
updated 3.1 years ago by 42k • written 3.9 years ago by ▴ 20
0
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1
reply
1.7k
views
Comment: Comment: How to shortlist the unaffected gene list from DESeq2 results
3.9 years ago rohitsatyam102 ▴ 20
0
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0
replies
4.2k
views
Comment: Comment: DEXSeq: question about usage coefficient and splicing plot
3.9 years ago rohitsatyam102 ▴ 20
0
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0
replies
1.6k
views
Comment: Comment: Interpreting the EstimateDispersion plot from the DEXSeq package
3.9 years ago rohitsatyam102 ▴ 20
0
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1
reply
1.4k
views
Comment: Comment: DEXSeq - what is the best way to filter out low expressed exons / genes?
3.9 years ago rohitsatyam102 ▴ 20
6
votes
7
replies
1.9k
views
Strategy to perform DESeq, DEXSeq workflow
DEXSeq DESeq2
updated 3.8 years ago by 42k • written 3.9 years ago by ▴ 20
0
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1
reply
1.9k
views
Comment: Comment: Strategy to perform DESeq, DEXSeq workflow
3.9 years ago rohitsatyam102 ▴ 20
0
votes
1
reply
1.7k
views
Comment: Comment: How to shortlist the unaffected gene list from DESeq2 results
3.9 years ago rohitsatyam102 ▴ 20
58 results • Page 1 of 2
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