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replies
449
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Removing UTR from GTF for gene quantification
edgeR DESeq2
updated 4 weeks ago by 43k • written 5 weeks ago by ▴ 20
4
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9
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2.3k
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Issues with seqlevelsStyle when making custom txdb objects for genomes/annotations from ToxoDB
txdbmaker GenomeInfoDb GenomicFeatures Biostrings gDNAx
updated 11 weeks ago by ★ 3.4k • written 4 months ago by ▴ 20
0
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0
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3.1k
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Comment: Comment: What is the importance of `--countReadPairs` in featureCounts on paired end data
3 months ago rohitsatyam102 ▴ 20
0
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0
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3.1k
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Comment: Comment: What is the importance of `--countReadPairs` in featureCounts on paired end data
3 months ago rohitsatyam102 ▴ 20
0
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0
replies
2.3k
views
Comment: Comment: nightmare to make custom txdb for genomes from ToxoDB
4 months ago rohitsatyam102 ▴ 20
0
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1
reply
2.3k
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Comment: Comment: nightmare to make custom txdb for genomes from ToxoDB
4 months ago rohitsatyam102 ▴ 20
0
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0
replies
1.1k
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Comment: Comment: Diffenrent result from EMBOSS needle and Biostrings pairwiseAlignment ?
6 months ago rohitsatyam102 ▴ 20
0
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1
reply
1.5k
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sampling random regions of same nucleotide composition from hg38 genome
annotatr regioneR gkmSVM
updated 17 months ago by • 0 • written 4.3 years ago by ▴ 20
0
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0
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2.1k
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Comment: Comment: Accounting for Batch effect reduces DEGs drastically
17 months ago rohitsatyam102 ▴ 20
0
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0
replies
2.1k
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Comment: Comment: Accounting for Batch effect reduces DEGs drastically
17 months ago rohitsatyam102 ▴ 20
0
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0
replies
2.1k
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Comment: Comment: Accounting for Batch effect reduces DEGs drastically
17 months ago rohitsatyam102 ▴ 20
0
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0
replies
2.1k
views
Comment: Comment: Accounting for Batch effect reduces DEGs drastically
17 months ago rohitsatyam102 ▴ 20
0
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0
replies
2.1k
views
Comment: Comment: Accounting for Batch effect reduces DEGs drastically
17 months ago rohitsatyam102 ▴ 20
0
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1
reply
2.1k
views
Comment: Comment: Accounting for Batch effect reduces DEGs drastically
17 months ago rohitsatyam102 ▴ 20
0
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1
reply
1.0k
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How to calculate CDS start and End per transcript from GTF file
dNdScv GenomicFeatures TxDb
17 months ago rohitsatyam102 ▴ 20
0
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0
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1.0k
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Answer: Answer: How to calculate CDS start and End per transcript from GTF file
17 months ago rohitsatyam102 ▴ 20
2
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10
replies
2.1k
views
Accounting for Batch effect reduces DEGs drastically
DESeq2
17 months ago rohitsatyam102 ▴ 20
0
votes
1
reply
1.4k
views
GViz plot coverage for multiple chromosome and multiple samples using BAM files and save them as a single pdf report
Gviz
2.8 years ago • updated 2.7 years ago rohitsatyam102 ▴ 20
0
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0
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1.4k
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Answer: Answer: GViz plot coverage for multiple chromosome and multiple samples using BAM files
2.7 years ago rohitsatyam102 ▴ 20
0
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0
replies
1.2k
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Comment: Comment: Unable to convert Uniprot ID to Gene IDs using Biomart
2.7 years ago rohitsatyam102 ▴ 20
3
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2
replies
1.2k
views
Unable to convert Uniprot ID to Gene IDs using Biomart
biomaRt
2.8 years ago • updated 2.7 years ago rohitsatyam102 ▴ 20
0
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0
replies
2.6k
views
Comment: Comment: Using SingleR for Single cell annotation with BulkRNASeq
2.9 years ago rohitsatyam102 ▴ 20
3
votes
4
replies
2.6k
views
Using SingleR for Single cell annotation with BulkRNASeq
SingleR
3.0 years ago • updated 2.9 years ago rohitsatyam102 ▴ 20
0
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0
replies
1.4k
views
Comment: Comment: Aberrant number of cells
3.0 years ago rohitsatyam102 ▴ 20
1
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0
replies
2.6k
views
Answer: Answer: Using SingleR for Single cell annotation with BulkRNASeq
3.0 years ago rohitsatyam102 ▴ 20
0
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0
replies
2.6k
views
Comment: Comment: Using SingleR for Single cell annotation with BulkRNASeq
3.0 years ago rohitsatyam102 ▴ 20
0
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1
reply
2.0k
views
Comment: Comment: How to shortlist the unaffected gene list from DESeq2 results
3.6 years ago rohitsatyam102 ▴ 20
0
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0
replies
2.3k
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Comment: Comment: Calculation of Log2 fold change in DEXSeq
3.6 years ago rohitsatyam102 ▴ 20
0
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1
reply
4.3k
views
Comment: Comment: ntop parameter in plotPCA(). DESeq2
3.6 years ago rohitsatyam102 ▴ 20
1
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1
reply
2.2k
views
Comment: Comment: How to calculate dispersion DESeq2 - Step by Step
3.6 years ago rohitsatyam102 ▴ 20
2
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1
reply
1.4k
views
barcodeRanks unusual warning "In smooth.spline(x[new.keep], y[new.keep], df = df, ...)"
DropletUtils
updated 3.9 years ago by ★ 28k • written 3.9 years ago by ▴ 20
0
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1
reply
6.4k
views
Comment: Comment: Error in conversion of SCE object to Seurat Object.
3.9 years ago rohitsatyam102 ▴ 20
0
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0
replies
1.4k
views
Comment: Comment: Should we apply DropletUtils on control case separately or on a common sce objec
4.0 years ago rohitsatyam102 ▴ 20
2
votes
5
replies
6.4k
views
Error in conversion of SCE object to Seurat Object.
SingleCellExperiment
updated 3.9 years ago by ▴ 60 • written 4.0 years ago by ▴ 20
3
votes
2
replies
1.4k
views
Should we apply DropletUtils on control case separately or on a common sce object.
DropletUtils
4.0 years ago rohitsatyam102 ▴ 20
0
votes
1
reply
6.4k
views
Comment: Comment: Error in conversion of SCE object to Seurat Object.
4.0 years ago rohitsatyam102 ▴ 20
0
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1
reply
2.2k
views
Comment: Comment: How to save multiple assays and subsequent processed data in single SummarizedEx
4.0 years ago rohitsatyam102 ▴ 20
0
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0
replies
2.2k
views
Comment: Comment: How to save multiple assays and subsequent processed data in single SummarizedEx
4.0 years ago rohitsatyam102 ▴ 20
4
votes
4
replies
2.2k
views
How to save multiple assays and subsequent processed data in single SummarizedExperiment Object
SummarizedExperiment
updated 4.0 years ago by 1.6k • written 4.0 years ago by ▴ 20
0
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0
replies
5.8k
views
Comment: Comment: Convert Agilent Probe ID to gene IDs/Symbols
4.1 years ago rohitsatyam102 ▴ 20
0
votes
3
replies
5.8k
views
Convert Agilent Probe ID to gene IDs/Symbols
AnnotationHub biomaRt
updated 2.7 years ago by • 0 • written 4.1 years ago by ▴ 20
11
votes
13
replies
5.7k
views
How to retrieve genomic coordinates for a list of entrezID and their respective gene names
genomic AnnotationHub GenomicRanges org.Hs.eg.db
4.4 years ago • updated 4.2 years ago rohitsatyam102 ▴ 20
0
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0
replies
5.7k
views
Answer: Answer: How to retrieve genomic coordinates for a list of entrezID and their respective
4.2 years ago rohitsatyam102 ▴ 20
0
votes
0
replies
6.5k
views
Comment: Comment: error while installing " BSgenome.Hsapiens.UCSC.hg19"
4.2 years ago rohitsatyam102 ▴ 20
1
vote
2
replies
4.2k
views
Error while Installing BSgenome.Hsapiens.UCSC.hg38
BSgenome.Hsapiens.UCSC.hg38
updated 4.2 years ago by ▴ 10 • written 4.3 years ago by ▴ 20
0
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1
reply
4.2k
views
Answer: Answer: Error while Installing BSgenome.Hsapiens.UCSC.hg38
4.3 years ago rohitsatyam102 ▴ 20
0
votes
1
reply
5.7k
views
Comment: Comment: How to retrieve genomic coordinates for a list of entrezID and their respective
4.4 years ago rohitsatyam102 ▴ 20
0
votes
1
reply
5.7k
views
Comment: Comment: How to retrieve genomic coordinates for a list of entrezID and their respective
4.4 years ago rohitsatyam102 ▴ 20
1
vote
0
replies
2.1k
views
Comment: Comment: Understanding DESeq2 contrasts and p-values
4.4 years ago rohitsatyam102 ▴ 20
8
votes
8
replies
2.0k
views
How to shortlist the unaffected gene list from DESeq2 results
DESeq2
updated 3.6 years ago by 43k • written 4.4 years ago by ▴ 20
65 results • Page 1 of 2
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