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average difference and global scaling for normalizing affymetrix expression data?
Microarray limma Microarray limma
updated 14.3 years ago by ★ 13k • written 14.3 years ago by ▴ 410
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1.9k
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Comment: C: row clustering in heatmap.2
16.4 years ago Johnstone, Alice ▴ 410
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2
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1.9k
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row clustering in heatmap.2
GO Clustering GO Clustering
updated 16.4 years ago by ▴ 400 • written 16.4 years ago by ▴ 410
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0
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1.0k
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GSEA GeneSetCollection for GO info from Illumina annotation package
Annotation GO Annotation GO
16.5 years ago Johnstone, Alice ▴ 410
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0
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1.1k
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Comment: C: GSEA GeneSetCollection
16.5 years ago Johnstone, Alice ▴ 410
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2
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1.1k
views
GSEA GeneSetCollection
GO GO
updated 16.5 years ago by 25k • written 16.5 years ago by ▴ 410
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0
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887
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Answer: A: readBeadSummaryData problem- duplicate row name error
16.7 years ago Johnstone, Alice ▴ 410
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1
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793
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How to remove probes from Illumina data?
GO GO
updated 16.7 years ago by ▴ 460 • written 16.7 years ago by ▴ 410
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0
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944
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Answer: A: What should happen to control probe information in bead level Illumina analyses?
16.7 years ago Johnstone, Alice ▴ 410
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0
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717
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What should happen to control probe information in bead level Illumina analyses?
16.7 years ago Johnstone, Alice ▴ 410
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0
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789
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Help for readIllumina beadlevel error
16.8 years ago Johnstone, Alice ▴ 410
0
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1
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907
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Help for readIllumina beadlevel error
updated 16.8 years ago by ▴ 460 • written 16.8 years ago by ▴ 410
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1
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805
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Illumina array quality checking and RegGrn values..
updated 16.8 years ago by ★ 3.6k • written 16.8 years ago by ▴ 410
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0
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1.3k
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Expired Illumina expression chip - advice for use and experimental design
GO limma DOSE GO limma DOSE
16.8 years ago Johnstone, Alice ▴ 410
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0
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800
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Answer: A: readBeadSummaryData() in beadarray package
16.9 years ago Johnstone, Alice ▴ 410
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1
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1.1k
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Comment: C: Empty featureData slot in beadsummary IlluminaExpressionSet object
16.9 years ago Johnstone, Alice ▴ 410
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3
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1.1k
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Empty featureData slot in beadsummary IlluminaExpressionSet object
updated 16.9 years ago by ▴ 460 • written 16.9 years ago by ▴ 410
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1
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1.7k
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Answer: A: About beadarray normaliseIllumina() warning messages
16.9 years ago Johnstone, Alice ▴ 410
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1
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1.4k
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Comment: C: Help with base file in AnnBuilder
17.1 years ago Johnstone, Alice ▴ 410
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1
reply
1.4k
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Comment: C: Help with base file in AnnBuilder
17.1 years ago Johnstone, Alice ▴ 410
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2
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1.4k
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Comment: C: Help with base file in AnnBuilder
17.1 years ago Johnstone, Alice ▴ 410
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8
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1.4k
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Help with base file in AnnBuilder
Annotation Organism Annotation Organism
updated 17.1 years ago by 67k • written 17.1 years ago by ▴ 410
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2
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855
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Expression levels of individual affymetrix probes
qPCR probe qPCR probe
updated 17.1 years ago by 67k • written 17.1 years ago by ▴ 410
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0
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1.1k
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Comment: C: BeadExplorer error
17.1 years ago Johnstone, Alice ▴ 410
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2
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1.1k
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BeadExplorer error
BeadExplorer BeadExplorer
updated 17.1 years ago by 25k • written 17.1 years ago by ▴ 410
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0
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1.1k
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Answer: A: About beadarray package
17.2 years ago Johnstone, Alice ▴ 410
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1
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1.1k
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Answer: A: About beadarray package
17.2 years ago Johnstone, Alice ▴ 410
0
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1
reply
1.1k
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Answer: A: About beadarray package
17.2 years ago Johnstone, Alice ▴ 410
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0
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719
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FW: how to 'bootstrap' expression data?
qPCR GO probe qPCR GO probe
17.2 years ago Johnstone, Alice ▴ 410
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2
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1.1k
views
how to 'bootstrap' expression data?
qPCR GO qPCR GO
updated 17.2 years ago by ★ 6.5k • written 17.2 years ago by ▴ 410
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1
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968
views
Error loading Illumina data LumiR
lumi lumi
17.2 years ago Johnstone, Alice ▴ 410
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0
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968
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Answer: A: Error loading Illumina data LumiR
17.2 years ago Johnstone, Alice ▴ 410
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0
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988
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Answer: A: lty argument not recognised in plot function]
17.2 years ago Johnstone, Alice ▴ 410
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0
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1.1k
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lty argument not recognised in plot function
17.2 years ago Johnstone, Alice ▴ 410
0
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0
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1.8k
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Answer: A: Lumi warning and question
17.3 years ago Johnstone, Alice ▴ 410
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0
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2.4k
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Answer: A: Illumina bead arrays
17.3 years ago Johnstone, Alice ▴ 410
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0
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1.1k
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Pulling significant gene ids from beadarray data
Biobase annotate affy affyio beadarray quantsmooth beadarraySNP lumi Biobase annotate
17.3 years ago Johnstone, Alice ▴ 410
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1
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1.5k
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ControlID Qcinfo slot in Illumina beadarray summary data?
geneplotter affy affyio beadarray quantsmooth beadarraySNP geneplotter affy affyio
updated 17.3 years ago by ▴ 320 • written 17.3 years ago by ▴ 410
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2
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2.7k
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read.phenoData vs read.AnnotatedDataFrame
updated 17.3 years ago by ★ 7.4k • written 17.3 years ago by ▴ 410
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0
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874
views
Answer: A: read.phenoData vs read.AnnotatedDataFrame
17.4 years ago Johnstone, Alice ▴ 410
0
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3
replies
874
views
read.phenoData vs read.AnnotatedDataFrame
17.4 years ago Johnstone, Alice ▴ 410
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