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Answer: A: Problem with lmfit
14.3 years ago Paolo Innocenti ▴ 320
0
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1.7k
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Answer: A: identical output plots for NUSE AND RLE
14.4 years ago Paolo Innocenti ▴ 320
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1.1k
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Limma and p-adjust: 'global' on non-orthogonal contrasts?
limma limma
14.5 years ago Paolo Innocenti ▴ 320
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787
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Model simplification on microarray data
14.6 years ago Paolo Innocenti ▴ 320
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836
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RMA (model II) regression with lmFit
Regression Regression
15.4 years ago Paolo Innocenti ▴ 320
0
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1.1k
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Problem with Hopach: "Error in dmat[ord, ]"
drosophila2 hopach drosophila2 hopach
15.4 years ago Paolo Innocenti ▴ 320
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2
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3.0k
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Random effects and variance components (was: Yet another nested design in limma)
affy limma siggenes factDesign maanova affy limma siggenes factDesign maanova
updated 15.5 years ago by 67k • written 15.5 years ago by ▴ 320
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1.4k
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Comment: C: Problem with Hopach: "Error in dmat[ord, ]"
15.5 years ago Paolo Innocenti ▴ 320
0
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1
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795
views
Category: testing for non-random chromosomal distribution of DE genes
GO Organism drosophila2 GO Organism drosophila2
updated 15.5 years ago by ★ 7.2k • written 15.5 years ago by ▴ 320
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2
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1.4k
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Problem with Hopach: "Error in dmat[ord, ]"
drosophila2 hopach drosophila2 hopach
updated 15.5 years ago by 6.7k • written 15.5 years ago by ▴ 320
0
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0
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2.9k
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Answer: A: Yet another nested design in limma
15.6 years ago Paolo Innocenti ▴ 320
0
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0
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1.2k
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Yet another nested design in limma
affy limma siggenes factDesign maanova affy limma siggenes factDesign maanova
15.6 years ago Paolo Innocenti ▴ 320
0
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0
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1.3k
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Comment: C: Breaking the "most genes not differentially expressed" assumption
15.6 years ago Paolo Innocenti ▴ 320
0
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4
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1.3k
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Breaking the "most genes not differentially expressed" assumption
Normalization affy limma Normalization affy limma
updated 15.6 years ago by ★ 13k • written 15.6 years ago by ▴ 320
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0
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1.3k
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Comment: C: Breaking the "most genes not differentially expressed" assumption
15.6 years ago Paolo Innocenti ▴ 320
0
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0
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1.0k
views
Yet another nested design in limma
affy limma affy limma
15.6 years ago Paolo Innocenti ▴ 320
0
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1
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1.0k
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Yet another nested design in limma
affy limma affy limma
updated 15.8 years ago by ★ 6.0k • written 15.8 years ago by ▴ 320
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0
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1.3k
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Comment: C: Vsn transformation repeatability
16.1 years ago Paolo Innocenti ▴ 320
0
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0
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1.7k
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Answer: A: statistics for differential expression: adjusted p-values<0.05 BUT negative B-od
16.1 years ago Paolo Innocenti ▴ 320
0
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2
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1.3k
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Vsn transformation repeatability
Microarray Drosophila melanogaster drosophila2 Microarray Drosophila melanogaster drosophila2
updated 16.1 years ago by ★ 13k • written 16.1 years ago by ▴ 320
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1
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1.4k
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R-genetics and Bioconductor for quantitative genetics
Genetics GeneticsPed Genetics GeneticsPed
updated 16.1 years ago by 6.7k • written 16.1 years ago by ▴ 320
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2
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1.9k
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How to get adjusted p values after "global" fdr correction in decideTests (limma)
updated 16.3 years ago by 51k • written 16.3 years ago by ▴ 320
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0
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1.9k
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Comment: C: How to get adjusted p values after "global" fdr correction in decideTests (limma
16.3 years ago Paolo Innocenti ▴ 320
0
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0
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807
views
parameters in graph.par in Rgraphviz
graph graph
16.5 years ago Paolo Innocenti ▴ 320
0
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1
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1.5k
views
AffyID in biomaRt?
GO drosophila2 affy biomaRt GO drosophila2 affy biomaRt
updated 16.6 years ago by ▴ 500 • written 16.6 years ago by ▴ 320
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1
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1.1k
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Reporting results of HyperGTest
GO goTools GO goTools
updated 16.6 years ago by ▴ 20 • written 16.6 years ago by ▴ 320
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1
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2.0k
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Comment: C: nsFilter and GSEA
16.9 years ago Paolo Innocenti ▴ 320
0
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7
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2.0k
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nsFilter and GSEA
16.9 years ago Paolo Innocenti ▴ 320
0
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1
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2.0k
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Answer: A: nsFilter and GSEA
16.9 years ago Paolo Innocenti ▴ 320
0
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1
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2.0k
views
Answer: A: nsFilter and GSEA
16.9 years ago Paolo Innocenti ▴ 320
0
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1
reply
1.1k
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Installing BioC + R 2.6: warnings
Biostrings Biostrings
updated 17.1 years ago by 16k • written 17.1 years ago by ▴ 320
0
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1
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791
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Beginner: resources, WebArray and CARMAweb.
updated 17.5 years ago by 67k • written 17.5 years ago by ▴ 320
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