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Comment: Comment: What number components should I use if I want to show 2D and 3D UMAP
2.2 years ago Guandong Shang ▴ 40
1
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2
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1.5k
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What number components should I use if I want to show 2D and 3D UMAP
scater UAMP scRNAseq
2.2 years ago Guandong Shang ▴ 40
0
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0
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713
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Answer: Answer: Converting from TAIR 8 to TAIR11
2.3 years ago Guandong Shang ▴ 40
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0
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1.3k
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Comment: Comment: how to plot a fitting line on the testPseudotime
2.3 years ago Guandong Shang ▴ 40
0
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2
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1.3k
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how to plot a fitting line on the testPseudotime
Pseudotime testPseudotime TSCAN SingleCell OSCA
2.3 years ago Guandong Shang ▴ 40
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0
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1.5k
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Comment: Comment: how to do downstram analysis to cells which are subsetted after MNN batch-correc
2.4 years ago Guandong Shang ▴ 40
4
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2
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1.5k
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how to do downstram analysis to cells which are subsetted after MNN batch-correction
batchelor fastMNN scRNAseq
2.4 years ago Guandong Shang ▴ 40
0
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4
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2.5k
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how to make the "reconstructed" value in intergated scRNA-seq UMAP plot more readable
scater batchelor scRNAseq fastMNN
updated 2.4 years ago by ★ 28k • written 2.4 years ago by ▴ 40
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0
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2.0k
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Comment: Comment: Subclustering after MNN batch-correction
2.4 years ago Guandong Shang ▴ 40
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0
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2.5k
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Comment: Comment: how to make the "reconstructed" value in intergated scRNA-seq UMAP plot more rea
2.4 years ago Guandong Shang ▴ 40
0
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0
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2.5k
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Comment: Comment: how to make the "reconstructed" value in intergated scRNA-seq UMAP plot more rea
2.4 years ago Guandong Shang ▴ 40
0
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0
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1.3k
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how to calculate similarity between each cluster in scRNA and bulk RNA-seq
SingleR scRNAseq
2.5 years ago Guandong Shang ▴ 40
0
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0
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2.1k
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Comment: Comment: FeaturePlot in scater
2.5 years ago Guandong Shang ▴ 40
3
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2
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2.1k
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FeaturePlot in scater
scater OSCA
2.5 years ago Guandong Shang ▴ 40
0
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0
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1.5k
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Comment: Comment: Can GSVA be applied in several sample type and each type only have two replicate
2.6 years ago Guandong Shang ▴ 40
1
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2
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1.5k
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Can GSVA be applied in several sample type and each type only have two replicates ?
GSVA
3.3 years ago • updated 2.6 years ago Guandong Shang ▴ 40
0
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0
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2.4k
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Comment: Comment: what's the difference between this two AnnotationDbi::select type in GO select
3.3 years ago Guandong Shang ▴ 40
0
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1
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2.4k
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Comment: Comment: what's the difference between this two AnnotationDbi::select type in GO select
3.3 years ago Guandong Shang ▴ 40
1
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6
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2.4k
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what's the difference between this two AnnotationDbi::select type in GO select
GO.db AnnotationDbi
updated 3.3 years ago by • 0 • written 3.3 years ago by ▴ 40
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0
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1.4k
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Answer: Answer: Help me do a gene enrichment analysis
3.3 years ago Guandong Shang ▴ 40
0
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1
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1.8k
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Comment: Comment: lfcShrink probelm in many 0 count genes RNA-seq data
3.3 years ago Guandong Shang ▴ 40
0
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1
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1.8k
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Comment: Comment: lfcShrink probelm in many 0 count genes RNA-seq data
3.4 years ago Guandong Shang ▴ 40
1
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4
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3.4k
views
weird MAplot or volcano plot of DESeq2 diff result
DESeq2
updated 3.4 years ago by 43k • written 3.4 years ago by ▴ 40
1
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5
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1.8k
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lfcShrink probelm in many 0 count genes RNA-seq data
ashr DESeq2 apeglm
updated 3.3 years ago by 43k • written 3.4 years ago by ▴ 40
0
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0
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3.4k
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Comment: Comment: weird MAplot or volcano plot of DESeq2 diff result
3.4 years ago Guandong Shang ▴ 40
0
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0
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3.4k
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Comment: Comment: weird MAplot or volcano plot of DESeq2 diff result
3.4 years ago Guandong Shang ▴ 40
2
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1
reply
30k
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Answer: Answer: DESeq2 normalization vs VST vs rlog
3.6 years ago Guandong Shang ▴ 40
3
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2
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1.0k
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Should I create a new class or using Common Classes
GenomicRanges
updated 3.6 years ago by 16k • written 3.6 years ago by ▴ 40
0
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0
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824
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how to construct a SNPlocs-class by myself
BSgenome SNPlocs
3.7 years ago Guandong Shang ▴ 40
0
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0
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1.6k
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Comment: Comment: The compare result is different in score and Conc in DiffBind
3.9 years ago Guandong Shang ▴ 40
0
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1
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1.6k
views
Comment: Comment: The compare result is different in score and Conc in DiffBind
3.9 years ago Guandong Shang ▴ 40
1
vote
2
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939
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How to make BiocParallel work in DiffBind when working under windows system
DiffBind
updated 3.9 years ago by 25k • written 3.9 years ago by ▴ 40
0
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1
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1.6k
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Comment: Comment: The compare result is different in score and Conc in DiffBind
3.9 years ago Guandong Shang ▴ 40
0
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0
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1.6k
views
Comment: Comment: The compare result is different in score and Conc in DiffBind
3.9 years ago Guandong Shang ▴ 40
1
vote
7
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1.6k
views
Conc_1 in differnet dba.report result is slightly different
DiffBind
updated 3.9 years ago by ★ 5.2k • written 3.9 years ago by ▴ 40
1
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8
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1.6k
views
The compare result is different in score and Conc in DiffBind
DiffBind
3.9 years ago Guandong Shang ▴ 40
0
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0
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1.6k
views
Answer: Answer: The compare result is different in score and Conc in DiffBind
3.9 years ago Guandong Shang ▴ 40
0
votes
0
replies
1.6k
views
Answer: Answer: Conc_1 in differnet dba.report result is slightly different
3.9 years ago Guandong Shang ▴ 40
0
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0
replies
1.6k
views
Comment: Comment: Conc_1 in differnet dba.report result is slightly different
3.9 years ago Guandong Shang ▴ 40
0
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0
replies
1.6k
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Comment: Comment: Conc_1 in differnet dba.report result is slightly different
3.9 years ago Guandong Shang ▴ 40
0
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1
reply
1.6k
views
Comment: Comment: Conc_1 in differnet dba.report result is slightly different
3.9 years ago Guandong Shang ▴ 40
0
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0
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1.8k
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Comment: Comment: first error: could not find function "readGAlignments" in BiocParallel
3.9 years ago Guandong Shang ▴ 40
3
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3
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1.8k
views
first error: could not find function "readGAlignments" in BiocParallel
BiocParallel
3.9 years ago Guandong Shang ▴ 40
2
votes
5
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1.4k
views
how to get the estimated libSize in DiffBind
diffbind
updated 4.1 years ago by ★ 5.2k • written 4.6 years ago by ▴ 40
1
vote
2
replies
871
views
Can I completely repeat the DiffBind results using DESeq2?
diffbind
updated 4.1 years ago by ★ 5.2k • written 4.5 years ago by ▴ 40
0
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0
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14k
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Comment: C: DESeq2: one condition vs multiple combined
4.2 years ago Guandong Shang ▴ 40
0
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1
reply
14k
views
Comment: C: DESeq2: one condition vs multiple combined
4.2 years ago Guandong Shang ▴ 40
2
votes
5
replies
1.5k
views
stat value is throwed out after lfcShrink in DESeq2
deseq2
updated 3 months ago by 43k • written 4.3 years ago by ▴ 40
0
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1
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4.1k
views
Comment: C: How to get all possible comparisons in DiffBind
4.5 years ago Guandong Shang ▴ 40
0
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0
replies
1.4k
views
Comment: C: how to get the estimated libSize in DiffBind
4.6 years ago Guandong Shang ▴ 40
78 results • Page 1 of 2
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