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Comment: Comment: GSEA preranked analysis downstream of DEseq2
2.5 years ago hermidalc ▴ 20
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Comment: Comment: GSEA preranked analysis downstream of DEseq2
2.5 years ago hermidalc ▴ 20
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Comment: C: Can NanoString data be analyzed using DESeq2?
4.8 years ago hermidalc ▴ 20
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Comment: C: Can NanoString data be analyzed using DESeq2?
4.8 years ago hermidalc ▴ 20
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1
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10k
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Comment: C: Can NanoString data be analyzed using DESeq2?
4.8 years ago hermidalc ▴ 20
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10k
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Comment: C: Can NanoString data be analyzed using DESeq2?
4.8 years ago hermidalc ▴ 20
0
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10k
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Comment: C: Can NanoString data be analyzed using DESeq2?
4.8 years ago hermidalc ▴ 20
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1
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10k
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Comment: C: Can NanoString data be analyzed using DESeq2?
4.8 years ago hermidalc ▴ 20
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1
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10k
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Comment: C: Can NanoString data be analyzed using DESeq2?
4.8 years ago hermidalc ▴ 20
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Answer: A: Application of RUV to a small Nanostring dataset
4.8 years ago hermidalc ▴ 20
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10k
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Comment: C: Can NanoString data be analyzed using DESeq2?
4.8 years ago hermidalc ▴ 20
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10k
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Comment: C: Can NanoString data be analyzed using DESeq2?
4.8 years ago hermidalc ▴ 20
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Comment: C: Why NanoStringDiff package so slow?
4.8 years ago hermidalc ▴ 20
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Comment: C: Why NanoStringDiff package so slow?
4.8 years ago hermidalc ▴ 20
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Comment: C: Nanostring analysis with limma
4.8 years ago hermidalc ▴ 20
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13k
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Comment: C: Nanostring analysis with limma
4.8 years ago hermidalc ▴ 20
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13k
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Comment: C: Nanostring analysis with limma
4.8 years ago hermidalc ▴ 20
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Comment: C: Use of pseudoalignment estimated counts as input to edgeR and Limma-Voom
5.3 years ago hermidalc ▴ 20
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2.6k
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Comment: C: Multiple samples per individual and unbalanced number of samples per individual:
5.3 years ago hermidalc ▴ 20
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6.6k
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Comment: C: Further clarification on when not to use duplicateCorrelation with technical rep
5.3 years ago hermidalc ▴ 20
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1
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2.6k
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Comment: C: Multiple samples per individual and unbalanced number of samples per individual:
5.3 years ago hermidalc ▴ 20
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Comment: C: dream vignette says limma-voom repeated measures two-group comparison needs two
5.3 years ago hermidalc ▴ 20
9
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11
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dream vignette says limma-voom repeated measures two-group comparison needs two duplicateCorrelation rounds which differs from limma user's guide and…
dream variancePartition limma differential expression repeated measures
updated 5.3 years ago by 52k • written 5.3 years ago by ▴ 20
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Comment: C: difference among tximport scaledTPM, lengthScaledTPM and the original TPM output
5.3 years ago hermidalc ▴ 20
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2
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19k
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Comment: C: difference among tximport scaledTPM, lengthScaledTPM and the original TPM output
5.3 years ago hermidalc ▴ 20
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3.1k
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Comment: C: dream vignette says limma-voom repeated measures two-group comparison needs two
5.3 years ago hermidalc ▴ 20
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0
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3.1k
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Comment: C: dream vignette says limma-voom repeated measures two-group comparison needs two
5.3 years ago hermidalc ▴ 20
0
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2
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3.1k
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Comment: C: dream vignette says limma-voom repeated measures two-group comparison needs two
5.3 years ago hermidalc ▴ 20
0
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1
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2.6k
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Comment: C: Multiple samples per individual and different number of samples per individual:
5.3 years ago hermidalc ▴ 20
1
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1
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3.1k
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Comment: C: dream vignette says limma-voom repeated measures two-group comparison needs two
5.3 years ago hermidalc ▴ 20
3
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2.6k
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Repeated measures per individual and unbalanced number of measures per individual: DE between groups still an ordinary two-group comparison?
differentialexpression deseq2 limma edger repeatedmeasures
5.3 years ago • updated 3.0 years ago hermidalc ▴ 20
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