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629
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Comment: Comment: Scores used for DiffBind's dba.plotHeatmap
9 months ago Sam ▴ 10
0
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2
replies
629
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Scores used for DiffBind's dba.plotHeatmap
DiffBind
9 months ago Sam ▴ 10
0
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0
replies
565
views
Comment: Comment: Inconsistent results in DiffBind
12 months ago Sam ▴ 10
0
votes
2
replies
648
views
In DiffBind, dba.blacklist changes the minOverlap parameter
DiffBind
written 13 months ago by ▴ 10
1
vote
2
replies
565
views
Inconsistent results in DiffBind
DiffBind
12 months ago Sam ▴ 10
0
votes
0
replies
648
views
Answer: Answer: In DiffBind, dba.blacklist changes the minOverlap parameter
12 months ago Sam ▴ 10
0
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0
replies
2.5k
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Comment: Comment: How to add a BioConductor package to a Docker image based on rocker/shiny
2.3 years ago Sam ▴ 10
0
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0
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2.5k
views
Comment: Comment: How to add a BioConductor package to a Docker image based on rocker/shiny
2.3 years ago Sam ▴ 10
0
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5
replies
2.5k
views
How to add a BioConductor package to a Docker image based on rocker/shiny
docker
2.3 years ago Sam ▴ 10
0
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0
replies
6.3k
views
Comment: Comment: Installing Bioconductor packages in Docker
2.4 years ago Sam ▴ 10
0
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0
replies
777
views
Creating a consensus peakset in DiffBind for all the conditions of an experiment
DiffBind
2.7 years ago Sam ▴ 10
0
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1
reply
5.7k
views
Comment: Comment: Using DiffBind blacklists and greylists with results mapped to BDGP6
3.0 years ago Sam ▴ 10
1
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2
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1.2k
views
What lfcSE is dependent upon?
DESeq2
written 3.4 years ago by ▴ 10
2
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1
reply
815
views
Why does samples order subtly influence the results of DESeq2?
DESeq2
updated 3.5 years ago by 43k • written 3.5 years ago by ▴ 10
0
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0
replies
906
views
Comment: Comment: TOAST output
3.6 years ago Sam ▴ 10
0
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2
replies
906
views
TOAST output
TOAST
3.6 years ago Sam ▴ 10
0
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1
reply
906
views
Comment: Comment: TOAST output
3.6 years ago Sam ▴ 10
0
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1
reply
995
views
Comment: Comment: DESeq2 unmix function
3.7 years ago Sam ▴ 10
3
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3
replies
995
views
DESeq2 unmix function
DESeq2
updated 3.7 years ago by 43k • written 3.7 years ago by ▴ 10
0
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0
replies
1.7k
views
Comment: Comment: ChIPseeker: Annotating Peaks with both upstream and downstream gene
3.7 years ago Sam ▴ 10
0
votes
0
replies
1.0k
views
What is the definition of flank_gene_distances output field in ChIPseeker
ChIPseeker
3.7 years ago Sam ▴ 10
0
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1
reply
3.9k
views
Comment: Comment: DiffBind how to retrieve normalized count matrix of ATAC-seq data
3.7 years ago Sam ▴ 10
2
votes
3
replies
1.4k
views
DiffBind does not use DESeq2 MLE estimation of fold change
DiffBind
updated 17 months ago by ★ 5.2k • written 3.7 years ago by ▴ 10
0
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0
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3.9k
views
Comment: Comment: DiffBind how to retrieve normalized count matrix of ATAC-seq data
3.7 years ago Sam ▴ 10
2
votes
2
replies
1.4k
views
A mismatch between DiffBind's results and the same results retreieved as DESeq2 (from DiffBind)
DiffBind
updated 3.7 years ago by ★ 5.2k • written 3.8 years ago by ▴ 10
0
votes
1
reply
3.9k
views
Comment: Comment: DiffBind how to retrieve normalized count matrix of ATAC-seq data
3.8 years ago Sam ▴ 10
0
votes
1
reply
5.7k
views
Comment: Comment: Using DiffBind blacklists and greylists with results mapped to BDGP6
3.8 years ago Sam ▴ 10
0
votes
1
reply
2.5k
views
Comment: Comment: DiffBind: dba.contrast for interaction terms
3.8 years ago Sam ▴ 10
0
votes
0
replies
1.4k
views
Comment: Comment: A mismatch between DiffBind's results and the same results retreieved as DESeq2
3.8 years ago Sam ▴ 10
0
votes
1
reply
1.2k
views
Comment: Comment: How sensitive is DiffBind to Deseq2 assumptions ?
3.8 years ago Sam ▴ 10
0
votes
4
replies
1.2k
views
How sensitive is DiffBind to Deseq2 assumptions ?
DESeq2 DiffBind
updated 3.7 years ago by ★ 5.2k • written 3.8 years ago by ▴ 10
0
votes
1
reply
2.2k
views
Comment: Comment: How to add chr to an dba object before differential analysis to enable removing
3.8 years ago Sam ▴ 10
0
votes
0
replies
2.3k
views
Comment: Comment: Learning DiffBind - some basic questions
3.8 years ago Sam ▴ 10
0
votes
2
replies
6.1k
views
Comment: Comment: What is the correct use of removeBatchEffect's design parameter
3.8 years ago Sam ▴ 10
0
votes
0
replies
1.9k
views
Comment: Comment: An attempt to better understand DESeq2 dispersion estimation
3.8 years ago Sam ▴ 10
0
votes
1
reply
5.7k
views
Comment: Comment: Using DiffBind blacklists and greylists with results mapped to BDGP6
3.8 years ago Sam ▴ 10
0
votes
1
reply
5.7k
views
Comment: Comment: Using DiffBind blacklists and greylists with results mapped to BDGP6
3.8 years ago Sam ▴ 10
0
votes
1
reply
5.7k
views
Comment: Comment: Using DiffBind blacklists and greylists with results mapped to BDGP6
3.8 years ago Sam ▴ 10
0
votes
1
reply
1.9k
views
Comment: Comment: An attempt to better understand DESeq2 dispersion estimation
3.8 years ago Sam ▴ 10
0
votes
1
reply
5.7k
views
Comment: Comment: Using DiffBind blacklists and greylists with results mapped to BDGP6
3.8 years ago Sam ▴ 10
0
votes
2
replies
2.3k
views
Comment: Comment: Learning DiffBind - some basic questions
3.8 years ago Sam ▴ 10
1
vote
4
replies
1.9k
views
An attempt to better understand DESeq2 dispersion estimation
DESeq2
3.8 years ago Sam ▴ 10
0
votes
0
replies
6.1k
views
Comment: Comment: What is the correct use of removeBatchEffect's design parameter
3.9 years ago Sam ▴ 10
0
votes
0
replies
6.1k
views
Comment: Comment: What is the correct use of removeBatchEffect's design parameter
3.9 years ago Sam ▴ 10
0
votes
0
replies
1.6k
views
Comment: Comment: Does DiffBind correctly designate peaks with very small fold-change to be statis
4.0 years ago Sam ▴ 10
0
votes
3
replies
1.6k
views
Does DiffBind correctly designate peaks with very small fold-change to be statistically significant?
DESeq2 DiffBind
updated 3.6 years ago by ★ 5.2k • written 4.0 years ago by ▴ 10
0
votes
1
reply
2.3k
views
Comment: Comment: Learning DiffBind - some basic questions
4.0 years ago Sam ▴ 10
1
vote
1
reply
878
views
What is the correct interpretation of the p-value in GreyListChIP?
GreyListChIP
updated 4.0 years ago by ▴ 670 • written 4.0 years ago by ▴ 10
0
votes
1
reply
5.7k
views
Comment: Comment: Using DiffBind blacklists and greylists with results mapped to BDGP6
4.0 years ago Sam ▴ 10
0
votes
1
reply
5.7k
views
Comment: Comment: Using DiffBind blacklists and greylists with results mapped to BDGP6
4.0 years ago Sam ▴ 10
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