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Comment: Comment: All genes in a set for gseGO funtion
2.2 years ago Guido Hooiveld ★ 4.1k
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1.3k
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Answer: Answer: Limma adj.p.value the same for many different p.values
2.2 years ago Guido Hooiveld ★ 4.1k
0
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1
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1.6k
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Comment: Comment: Non-model organism , CluserProfiler message "No gene can be mapped"
2.2 years ago Guido Hooiveld ★ 4.1k
0
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2
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1.6k
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Comment: Comment: Non-model organism , CluserProfiler message "No gene can be mapped"
2.2 years ago Guido Hooiveld ★ 4.1k
0
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1
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1.9k
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Comment: Comment: ERROR: failed to find the gene identifier attribute in the 9th column of the pro
2.3 years ago Guido Hooiveld ★ 4.1k
1
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1
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8.0k
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Answer: Answer: ClusterProfiler DotPlot Vs Ridgeplot
2.3 years ago Guido Hooiveld ★ 4.1k
0
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1
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4.5k
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Comment: Comment: NCBI Locus ID to gene ID conversion
2.3 years ago Guido Hooiveld ★ 4.1k
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0
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6.9k
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Answer: Answer: Any tools to convert .gff to .gtf format
2.3 years ago Guido Hooiveld ★ 4.1k
0
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0
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759
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Answer: Answer: Data visualization
2.3 years ago Guido Hooiveld ★ 4.1k
1
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1
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3.1k
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Comment: Comment: pathview says my nonmodel species is unknown: "species invalid"
2.3 years ago Guido Hooiveld ★ 4.1k
0
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1
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3.1k
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Comment: Comment: pathview says my nonmodel species is unknown: "species invalid"
2.3 years ago Guido Hooiveld ★ 4.1k
1
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0
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3.3k
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Comment: Comment: How should I set my eps value in cluster profiler?
2.3 years ago Guido Hooiveld ★ 4.1k
1
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0
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1.0k
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Comment: Comment: GSEA with Wikipathways not entirely reproducible
2.3 years ago Guido Hooiveld ★ 4.1k
0
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0
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3.1k
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Answer: Answer: Annotation in pheatmap
2.4 years ago Guido Hooiveld ★ 4.1k
0
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0
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5.0k
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Comment: Comment: Unable to generate a dotplot to view the enrichment analysis results (clusterPro
2.4 years ago Guido Hooiveld ★ 4.1k
0
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1
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5.0k
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Comment: Comment: Unable to generate a dotplot to view the enrichment analysis results (clusterPro
2.4 years ago Guido Hooiveld ★ 4.1k
0
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1
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4.8k
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Answer: Answer: What is the significance of "Zero Cross" in Ranked List Metric in Gene Set Enric
2.5 years ago Guido Hooiveld ★ 4.1k
0
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0
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1.2k
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Answer: Answer: Using queryMany() in mygene package: Problem of querying Entrez gene IDs based o
2.5 years ago Guido Hooiveld ★ 4.1k
1
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1
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1.6k
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Comment: Comment: How to create an aldex.clr object from a "selex" data table
2.5 years ago Guido Hooiveld ★ 4.1k
0
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1
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1.6k
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Comment: Comment: How to create an aldex.clr object from a "selex" data table
2.5 years ago Guido Hooiveld ★ 4.1k
2
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1
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11k
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Answer: Answer: ENSEMBL to ENTREZ ID
2.5 years ago Guido Hooiveld ★ 4.1k
0
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1
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4.6k
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Comment: Comment: Pathview unable to download pathways
2.5 years ago Guido Hooiveld ★ 4.1k
0
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0
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1.0k
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Answer: Answer: Pathview error Warning: Parsing ./mmu04928.xml file failed, please check the fil
2.5 years ago Guido Hooiveld ★ 4.1k
3
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1
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4.6k
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Answer: Answer: Pathview unable to download pathways
2.5 years ago • updated 2.3 years ago Guido Hooiveld ★ 4.1k
1
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0
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1.1k
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Answer: Answer: Can't load UCSC transcript IDs
2.5 years ago Guido Hooiveld ★ 4.1k
0
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0
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1.3k
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Comment: Comment: Dotplot from enricher outputting very few genes
2.5 years ago Guido Hooiveld ★ 4.1k
0
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0
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1.0k
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Comment: Comment: R Bioconductor package Affxparser keeps crashing
2.5 years ago Guido Hooiveld ★ 4.1k
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0
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1.0k
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Comment: Comment: change a column within a DESeq results object
2.5 years ago Guido Hooiveld ★ 4.1k
0
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0
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3.1k
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Comment: Comment: ENSEMBL to gene symbol
2.5 years ago Guido Hooiveld ★ 4.1k
1
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1
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2.9k
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Answer: Answer: TERM2NAME for enricher if I have list of GO IDs
2.5 years ago Guido Hooiveld ★ 4.1k
0
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1
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2.0k
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Comment: Comment: help please！
2.6 years ago Guido Hooiveld ★ 4.1k
0
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2
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2.0k
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Answer: Answer: help please！
2.6 years ago Guido Hooiveld ★ 4.1k
0
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1
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4.4k
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Comment: Comment: UniprotKB AC/ID to Entrez ID Conversion
2.6 years ago Guido Hooiveld ★ 4.1k
0
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1
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2.3k
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Comment: Comment: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array
2.6 years ago Guido Hooiveld ★ 4.1k
2
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1
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4.4k
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Answer: Answer: UniprotKB AC/ID to Entrez ID Conversion
2.6 years ago Guido Hooiveld ★ 4.1k
2
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1
reply
2.3k
views
Answer: Answer: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array
2.6 years ago Guido Hooiveld ★ 4.1k
0
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0
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3.6k
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Comment: Comment: EnrichGO not working with db created from annotationhub
2.6 years ago Guido Hooiveld ★ 4.1k
0
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1
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3.6k
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Comment: Comment: EnrichGO not working with db created from annotationhub
2.6 years ago Guido Hooiveld ★ 4.1k
0
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1
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3.6k
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Comment: Comment: EnrichGO not working with db created from annotationhub
2.6 years ago Guido Hooiveld ★ 4.1k
0
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1
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3.6k
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Comment: Comment: EnrichGO not working with db created from annotationhub
2.6 years ago Guido Hooiveld ★ 4.1k
0
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1
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3.6k
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Comment: Comment: EnrichGO not working with db created from annotationhub
2.6 years ago Guido Hooiveld ★ 4.1k
0
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2
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3.6k
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Answer: Answer: EnrichGO not working with db created from annotationhub
2.6 years ago Guido Hooiveld ★ 4.1k
1
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1
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1.3k
views
Comment: Comment: cluster profiler
2.6 years ago Guido Hooiveld ★ 4.1k
0
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10
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3.4k
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Comment: Comment: AnnotationForge::makeOrgPackage GO Ids mistake
2.7 years ago Guido Hooiveld ★ 4.1k
2
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0
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2.7k
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Answer: Answer: enrichKEGG
2.7 years ago Guido Hooiveld ★ 4.1k
0
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0
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3.8k
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Comment: Comment: clusterProfiler-GO enrichment Error
2.7 years ago Guido Hooiveld ★ 4.1k
0
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0
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2.7k
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Comment: Comment: Use of clusterProfiler : Error in testForValidKeytype(x, keytype)
2.7 years ago Guido Hooiveld ★ 4.1k
0
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0
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5.3k
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Answer: Answer: Best way to do RNA-seq analysis for a small number of samples obtained from 2 di
2.7 years ago Guido Hooiveld ★ 4.1k
0
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0
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2.7k
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Comment: Comment: Use of clusterProfiler : Error in testForValidKeytype(x, keytype)
2.7 years ago Guido Hooiveld ★ 4.1k
0
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2
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2.7k
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Comment: Comment: Use of clusterProfiler : Error in testForValidKeytype(x, keytype)
2.7 years ago Guido Hooiveld ★ 4.1k
719 results • Page 4 of 15
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