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Answer: Answer: Can a expressed gene dataset yielded after CPM be used in DESeq2 and EdgeR?
20 months ago Guido Hooiveld ★ 4.1k
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1.7k
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Comment: Comment: how to add an enrichment score to a kegg pathway enrichment analysis?
20 months ago Guido Hooiveld ★ 4.1k
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2.0k
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Comment: Comment: Failed to install Biobase
21 months ago Guido Hooiveld ★ 4.1k
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1
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1.8k
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Answer: Answer: pathview: Warning: Failed to download KEGG xml/png files, hsa04110 skipped!
21 months ago Guido Hooiveld ★ 4.1k
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8.1k
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Comment: Comment: KEGG enrichment in R and gene IDs
21 months ago Guido Hooiveld ★ 4.1k
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1
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8.1k
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Comment: Comment: KEGG enrichment in R and gene IDs
21 months ago Guido Hooiveld ★ 4.1k
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1
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8.1k
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Comment: Comment: KEGG enrichment in R and gene IDs
21 months ago Guido Hooiveld ★ 4.1k
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1
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8.1k
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Comment: Comment: KEGG enrichment in R and gene IDs
21 months ago Guido Hooiveld ★ 4.1k
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1
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8.1k
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Answer: Answer: KEGG enrichment in R and gene IDs
21 months ago Guido Hooiveld ★ 4.1k
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0
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1.6k
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Comment: Comment: Am I able to add gene names/symbols to an enrichGO() output?
21 months ago Guido Hooiveld ★ 4.1k
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6.2k
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Comment: Comment: Reduce the number of nodes appear in the cnetplot of clusterprofiler
21 months ago Guido Hooiveld ★ 4.1k
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6.2k
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Comment: Comment: Reduce the number of nodes appear in the cnetplot of clusterprofiler
21 months ago Guido Hooiveld ★ 4.1k
0
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1
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6.2k
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Answer: Answer: Reduce the number of nodes appear in the cnetplot of clusterprofiler
21 months ago Guido Hooiveld ★ 4.1k
1
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0
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5.8k
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Comment: Comment: gseKEGG - no gene can be mapped (RNAseq analysis)
21 months ago Guido Hooiveld ★ 4.1k
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2.7k
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Comment: Comment: Problem with universe argument in enrichKEGG
21 months ago Guido Hooiveld ★ 4.1k
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1
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3.1k
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Comment: Comment: clusterProfiler for KEGG enrichment (non-model species) Over-Representation Anal
21 months ago Guido Hooiveld ★ 4.1k
1
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1
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3.1k
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Comment: Comment: clusterProfiler for KEGG enrichment (non-model species) Over-Representation Anal
21 months ago Guido Hooiveld ★ 4.1k
1
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0
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1.6k
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Comment: Comment: Is ther an annotation package for sheep (Ovis aries)
22 months ago Guido Hooiveld ★ 4.1k
0
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1
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2.9k
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Comment: Comment: AnnotationForge::makeOrgPackageFromNCBI - ERROR to access url (NCBI FTP site)
22 months ago Guido Hooiveld ★ 4.1k
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2
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1.6k
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Comment: Comment: mas5calls function doesn't work; mirna40cdf problem
22 months ago Guido Hooiveld ★ 4.1k
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1
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3.1k
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Comment: Comment: pathview says my nonmodel species is unknown: "species invalid"
22 months ago Guido Hooiveld ★ 4.1k
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1
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1.6k
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Answer: Answer: Is ther an annotation package for sheep (Ovis aries)
22 months ago Guido Hooiveld ★ 4.1k
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1
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2.8k
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Comment: Comment: MA plot
23 months ago Guido Hooiveld ★ 4.1k
3
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2.8k
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Comment: Comment: MA plot
23 months ago Guido Hooiveld ★ 4.1k
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1
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2.8k
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Comment: Comment: MA plot
23 months ago Guido Hooiveld ★ 4.1k
1
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1
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936
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Answer: Answer: select with org.Mm.eg.db does not give ENSEMBL ids
23 months ago Guido Hooiveld ★ 4.1k
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0
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2.9k
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Comment: Comment: How can I limit the number of displayed genes in heatplot
23 months ago Guido Hooiveld ★ 4.1k
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1
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3.4k
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Answer: Answer: clusterProfiler - custom annotations
24 months ago Guido Hooiveld ★ 4.1k
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2
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2.9k
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Comment: Comment: How can I limit the number of displayed gene sin heatplot
24 months ago Guido Hooiveld ★ 4.1k
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0
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1.2k
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Comment: Comment: DGE genes are not available in GSEA
2.0 years ago Guido Hooiveld ★ 4.1k
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0
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4.1k
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Comment: Comment: Error in UseMethod("rescale")
2.0 years ago Guido Hooiveld ★ 4.1k
1
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1
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3.1k
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Comment: Comment: Implementation of the "original" GSEA algorithm in R
2.0 years ago Guido Hooiveld ★ 4.1k
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1
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4.6k
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Comment: Comment: KEGG enrichment analysis for non model organism
2.0 years ago Guido Hooiveld ★ 4.1k
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1
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4.6k
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Comment: Comment: KEGG enrichment analysis for non model organism
2.0 years ago Guido Hooiveld ★ 4.1k
0
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0
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1.7k
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Comment: Comment: Questions about non-model organisms gene enrichment analysis
2.0 years ago Guido Hooiveld ★ 4.1k
0
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0
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1.9k
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Comment: Comment: Adding geneID to list of gene locus IDs
2.1 years ago Guido Hooiveld ★ 4.1k
1
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1
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1.9k
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Answer: Answer: Adding geneID to list of gene locus IDs
2.1 years ago Guido Hooiveld ★ 4.1k
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0
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1.0k
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Comment: Comment: Error installing Bioc
2.1 years ago Guido Hooiveld ★ 4.1k
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1
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1.0k
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Comment: Comment: Error installing Bioc
2.1 years ago Guido Hooiveld ★ 4.1k
1
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1
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3.2k
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Comment: Comment: Result from GSEA for non-model organism not as expected
2.1 years ago Guido Hooiveld ★ 4.1k
1
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1
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3.2k
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Comment: Comment: Result from GSEA for non-model organism not as expected
2.2 years ago Guido Hooiveld ★ 4.1k
0
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0
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2.7k
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Comment: Comment: Error when annotating ENSEMBLE transcript IDs from chicken annotation DB
2.2 years ago Guido Hooiveld ★ 4.1k
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1
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2.7k
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Comment: Comment: Error when annotating ENSEMBLE transcript IDs from chicken annotation DB
2.2 years ago Guido Hooiveld ★ 4.1k
0
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1
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1.9k
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Comment: Comment: Peak annotation
2.2 years ago Guido Hooiveld ★ 4.1k
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1
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1.9k
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Comment: Comment: Peak annotation
2.2 years ago Guido Hooiveld ★ 4.1k
0
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1
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1.9k
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Comment: Comment: Peak annotation
2.2 years ago Guido Hooiveld ★ 4.1k
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0
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6.3k
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Comment: Comment: ridgeplot doesn't work: Error in ans[ypos] <- rep(yes, length.out = len)[ypos] :
2.2 years ago Guido Hooiveld ★ 4.1k
0
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0
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4.9k
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Comment: Comment: All genes in a set for gseGO funtion
2.2 years ago Guido Hooiveld ★ 4.1k
1
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1
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4.9k
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Comment: Comment: All genes in a set for gseGO funtion
2.2 years ago Guido Hooiveld ★ 4.1k
1
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1
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4.9k
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Comment: Comment: All genes in a set for gseGO funtion
2.2 years ago Guido Hooiveld ★ 4.1k
719 results • Page 3 of 15
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