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Comment: Comment: Help with identifying genes mapped to KEGG pathway using pathview
8 months ago Guido Hooiveld ★ 4.1k
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1.0k
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Answer: Answer: The order of those tied genes will be arbitrary, which may produce unexpected re
8 months ago Guido Hooiveld ★ 4.1k
1
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1
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772
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Comment: Comment: Only positive enrichment score in GSEA
8 months ago Guido Hooiveld ★ 4.1k
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1
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4.4k
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Answer: Answer: enrichGOgradient color change
9 months ago Guido Hooiveld ★ 4.1k
0
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0
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493
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Comment: Comment: Error in enrichKEGG for a model organism
10 months ago Guido Hooiveld ★ 4.1k
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0
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1.4k
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Comment: Comment: Error MakeOrgPackagefromNCBI
10 months ago Guido Hooiveld ★ 4.1k
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1.4k
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Comment: Comment: Error MakeOrgPackagefromNCBI
10 months ago Guido Hooiveld ★ 4.1k
0
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1
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839
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Answer: Answer: Problem with buildGOmap from clusterProfiler
10 months ago Guido Hooiveld ★ 4.1k
0
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1
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2.9k
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Comment: Comment: Looking for documentation about the use of "split = .sign" in enrichplot's dotpl
10 months ago Guido Hooiveld ★ 4.1k
1
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1
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2.9k
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Comment: Comment: Looking for documentation about the use of "split = .sign" in enrichplot's dotpl
10 months ago Guido Hooiveld ★ 4.1k
1
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1
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2.9k
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Comment: Comment: Looking for documentation about the use of "split = .sign" in enrichplot's dotpl
10 months ago Guido Hooiveld ★ 4.1k
1
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0
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826
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Comment: Comment: Enrichement with clusterProfiler and biomart
11 months ago Guido Hooiveld ★ 4.1k
1
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1
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851
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Comment: Comment: Access genes associated with GO terms for a topGO object created with gene2GO
11 months ago Guido Hooiveld ★ 4.1k
0
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0
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9.2k
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Comment: Comment: No gene can be mapped error with clusterprofiler
11 months ago Guido Hooiveld ★ 4.1k
0
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0
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3.4k
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Comment: Comment: clusterProfiler - custom annotations
11 months ago Guido Hooiveld ★ 4.1k
1
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0
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3.1k
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Comment: Comment: clusterProfiler for KEGG enrichment (non-model species) Over-Representation Anal
11 months ago Guido Hooiveld ★ 4.1k
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0
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6.1k
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Comment: Comment: GO enrichment analysis on Solanum lycopersicum proteomics dataset (UniProt IDs)
12 months ago Guido Hooiveld ★ 4.1k
0
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0
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765
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Comment: Comment: Error Oligo package asking for pd.2.0 package annotation
12 months ago Guido Hooiveld ★ 4.1k
0
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1
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765
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Answer: Answer: Error Oligo package asking for pd.2.0 package annotation
12 months ago Guido Hooiveld ★ 4.1k
0
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0
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1.7k
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Comment: Comment: How can we use the organism database created by makeorgPackageFromNCBI to KEGG a
12 months ago Guido Hooiveld ★ 4.1k
0
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1
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1.7k
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Comment: Comment: How can we use the organism database created by makeorgPackageFromNCBI to KEGG a
12 months ago Guido Hooiveld ★ 4.1k
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0
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1.3k
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Comment: Comment: It's possible to use clusterProfiler without an annotationDBI package
12 months ago Guido Hooiveld ★ 4.1k
0
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1
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1.3k
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Comment: Comment: It's possible to use clusterProfiler without an annotationDBI package
12 months ago Guido Hooiveld ★ 4.1k
0
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1
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1.3k
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Comment: Comment: It's possible to use clusterProfiler without an annotationDBI package
12 months ago Guido Hooiveld ★ 4.1k
0
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2
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1.3k
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Comment: Comment: It's possible to use clusterProfiler without an annotationDBI package
12 months ago Guido Hooiveld ★ 4.1k
0
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1
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1.3k
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Answer: Answer: It's possible to use clusterProfiler without an annotationDBI package
12 months ago Guido Hooiveld ★ 4.1k
1
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0
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1.9k
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Comment: Comment: Annotation hub and clusterProfiler errors
13 months ago Guido Hooiveld ★ 4.1k
0
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0
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1.4k
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Comment: Comment: Important Bioconductor Release 3.18 deadlines this week
14 months ago Guido Hooiveld ★ 4.1k
1
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1
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1.3k
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Comment: Comment: Help with orgdb for non-model species via makeOrgPackageFromNCBI
14 months ago Guido Hooiveld ★ 4.1k
0
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0
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4.5k
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Comment: Comment: NCBI Locus ID to gene ID conversion
14 months ago Guido Hooiveld ★ 4.1k
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0
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2.5k
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Comment: Comment: pathview error "negative length vectors are not allowed
14 months ago Guido Hooiveld ★ 4.1k
0
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1
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2.5k
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Comment: Comment: pathview error "negative length vectors are not allowed
14 months ago Guido Hooiveld ★ 4.1k
0
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1
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969
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Comment: Comment: Why do I obtain Identical Adj.P value when running edgeR ?
15 months ago Guido Hooiveld ★ 4.1k
1
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1
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1.5k
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Answer: Answer: Cluster profiler emap plot - what are the annotations?
15 months ago Guido Hooiveld ★ 4.1k
0
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1
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2.2k
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Answer: Answer: apply clusterProfiler::simplify on merge_result list
15 months ago Guido Hooiveld ★ 4.1k
2
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1
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674
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Answer: Answer: Broken UNITE 9.0 link (General FASTA Release)
16 months ago Guido Hooiveld ★ 4.1k
1
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0
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1.9k
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Comment: Comment: ERROR in EnrichKEGG(), 'species should be listed' in, download method do not cha
16 months ago Guido Hooiveld ★ 4.1k
1
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1
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1.6k
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Comment: Comment: pathview - a species in KEGG pathway but not in 'korg'
18 months ago Guido Hooiveld ★ 4.1k
1
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1
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759
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Answer: Answer: Affymetrix analysis Chiptype hgu133plus2hsentrezg.db vs hgu133plus2.db
18 months ago Guido Hooiveld ★ 4.1k
0
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0
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6.1k
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Comment: Comment: Genelist input for ClusterProfiler
18 months ago Guido Hooiveld ★ 4.1k
1
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1
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7.4k
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Comment: Comment: Ensembl plants at annotationHub?
18 months ago Guido Hooiveld ★ 4.1k
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1
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1.6k
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Comment: Comment: enhanced volcano , different -log10pvalue of the same gene
19 months ago Guido Hooiveld ★ 4.1k
0
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1
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1.5k
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Comment: Comment: failed to use tximport for creating count matrix from kallisto
19 months ago Guido Hooiveld ★ 4.1k
1
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1
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1.5k
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Comment: Comment: failed to use tximport for creating count matrix from kallisto
19 months ago Guido Hooiveld ★ 4.1k
1
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1
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1.5k
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Comment: Comment: failed to use tximport for creating count matrix from kallisto
19 months ago Guido Hooiveld ★ 4.1k
0
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1
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2.0k
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Comment: Comment: enrichKEGG function error
20 months ago Guido Hooiveld ★ 4.1k
0
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1
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2.0k
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Answer: Answer: enrichKEGG function error
20 months ago Guido Hooiveld ★ 4.1k
1
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0
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2.1k
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Answer: Answer: Error with Pathview: Bad Request (HTTP 400)
20 months ago Guido Hooiveld ★ 4.1k
0
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1
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1.2k
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Comment: Comment: Unable to install BiocManager
20 months ago Guido Hooiveld ★ 4.1k
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0
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1.7k
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Comment: Comment: how to add an enrichment score to a kegg pathway enrichment analysis?
20 months ago Guido Hooiveld ★ 4.1k
719 results • Page 2 of 15
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