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support site: add & sort on date when searching
support.bioconductor.org
updated 8.6 years ago by 68k • written 8.6 years ago by ★ 4.1k
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Comment: C: Oligo: cannot fit robust Probe Level linear Models / fitPLM when using a custom
8.9 years ago Guido Hooiveld ★ 4.1k
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1
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Pathview: visualization of data
pathview data visualization
updated 8.9 years ago by ★ 1.6k • written 8.9 years ago by ★ 4.1k
1
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0
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Answer: A: ann_objs$MAPCOUNTS <- AnnotationDbi:::createMAPCOUNTS(dbconn, prefix) does not w
9.0 years ago Guido Hooiveld ★ 4.1k
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Comment: C: Org.db: why a supposed unique key (ID) has multiple entries?
9.0 years ago Guido Hooiveld ★ 4.1k
1
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1
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2.7k
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Comment: C: Limma/oligo always crashing
9.0 years ago Guido Hooiveld ★ 4.1k
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1
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3.2k
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Comment: C: Org.db: why a supposed unique key (ID) has multiple entries?
9.0 years ago Guido Hooiveld ★ 4.1k
0
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1
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3.2k
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Comment: C: Org.db: why a supposed unique key (ID) has multiple entries?
9.0 years ago Guido Hooiveld ★ 4.1k
3
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13
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3.2k
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Org.db: why a supposed unique key (ID) has multiple entries?
annotationhub organismdb orgdb unsupported organisms
updated 9.0 years ago by ★ 6.8k • written 9.1 years ago by ★ 4.1k
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1
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5.4k
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Comment: C: how to use "non-standard" species for KEGG / GO analysis in limma?
9.0 years ago Guido Hooiveld ★ 4.1k
1
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2
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3.6k
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minfi, bumphunter + complex experimental design, and 3 other 450K queries
GO convert minfi bumphunter GO convert minfi bumphunter
updated 9.1 years ago by ▴ 30 • written 10.7 years ago by ★ 4.1k
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1
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Comment: C: how to use "non-standard" species for KEGG / GO analysis in limma?
9.1 years ago Guido Hooiveld ★ 4.1k
8
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8
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5.4k
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how to use "non-standard" species for KEGG / GO analysis in limma?
limma kegga goanna
updated 9.1 years ago by 52k • written 9.1 years ago by ★ 4.1k
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1
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2.8k
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Comment: C: Can "Glue Grant" arrays be processed with pd.hta.2.0?
9.1 years ago Guido Hooiveld ★ 4.1k
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1
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2.8k
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Comment: C: Can "Glue Grant" arrays be processed with pd.hta.2.0?
9.1 years ago Guido Hooiveld ★ 4.1k
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0
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Comment: C: Can "Glue Grant" arrays be processed with pd.hta.2.0?
9.1 years ago Guido Hooiveld ★ 4.1k
2
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3
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2.8k
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Comment: C: Can "Glue Grant" arrays be processed with pd.hta.2.0?
9.1 years ago Guido Hooiveld ★ 4.1k
0
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0
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3.4k
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Comment: C: matching probes to genes from pd.porgene.1.1.st array
9.2 years ago Guido Hooiveld ★ 4.1k
0
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1
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3.4k
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Answer: A: matching probes to genes from pd.porgene.1.1.st array
9.2 years ago Guido Hooiveld ★ 4.1k
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0
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3.4k
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Comment: C: matching probes to genes from pd.porgene.1.1.st array
9.2 years ago Guido Hooiveld ★ 4.1k
0
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0
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Comment: C: how to set design for 2-dye Agilent array experiment with common reference group
9.2 years ago Guido Hooiveld ★ 4.1k
2
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3
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1.6k
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how to set design for 2-dye Agilent array experiment with common reference group?
limma 2-dye agilent common reference design
updated 9.2 years ago by 68k • written 9.2 years ago by ★ 4.1k
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0
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Comment: C: how to set design for 2-dye Agilent array experiment with common reference group
9.2 years ago Guido Hooiveld ★ 4.1k
0
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1
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2.9k
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Comment: C: Load CDF files for Affymetrix ST 2.0 microarrays
9.2 years ago Guido Hooiveld ★ 4.1k
0
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3
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2.9k
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Answer: A: Load CDF files for Affymetrix ST 2.0 microarrays
9.2 years ago Guido Hooiveld ★ 4.1k
0
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0
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1.1k
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Answer: A: Looking for a package allowing Affymetrix MoGene2.1ST processing
9.2 years ago Guido Hooiveld ★ 4.1k
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0
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Comment: C: Question on DESeq2 nested model example
9.2 years ago Guido Hooiveld ★ 4.1k
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0
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Comment: C: Question on DESeq2 nested model example
9.2 years ago Guido Hooiveld ★ 4.1k
0
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3
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1.4k
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Question on DESeq2 nested model example
deseq2 design matrix
updated 9.2 years ago by 43k • written 9.2 years ago by ★ 4.1k
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0
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Comment: C: AnnotationHub: change download location of database
9.2 years ago Guido Hooiveld ★ 4.1k
1
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2
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1.9k
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AnnotationHub: change download location of database
annotationhub installation
updated 9.2 years ago by 25k • written 9.2 years ago by ★ 4.1k
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0
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Comment: C: limma:question on design for (paired?) 2 dye experiment
9.3 years ago Guido Hooiveld ★ 4.1k
2
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2
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1.4k
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limma:question on design for (paired?) 2 dye experiment
limma limma design matrix design and contrast matrix 2-dye
updated 9.3 years ago by 52k • written 9.3 years ago by ★ 4.1k
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0
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Answer: A: normalizing all affymetrix array type with affy package impossible with R 3.x ?
9.3 years ago Guido Hooiveld ★ 4.1k
1
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1
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2.1k
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Answer: A: Affymetrix mogene 2.0 annotation data vs 2.1
9.3 years ago Guido Hooiveld ★ 4.1k
0
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0
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1.9k
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Answer: A: .DTT file Affymetrix
9.4 years ago Guido Hooiveld ★ 4.1k
4
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5
replies
1.8k
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limma: genas + arrayweights = OK?
limma genas arrayweights
updated 9.4 years ago by 52k • written 9.4 years ago by ★ 4.1k
1
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1
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4.3k
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Comment: C: Design and contrast question limma (additive or nested or duplicateCorrelation()
9.6 years ago Guido Hooiveld ★ 4.1k
7
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6
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4.3k
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Design and contrast question limma (additive or nested or duplicateCorrelation())??
limma model matrix limma design matrix complex-design
updated 9.6 years ago by ★ 28k • written 9.6 years ago by ★ 4.1k
0
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0
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4.3k
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Comment: C: problem with retrieving UniProt annotation data
9.9 years ago Guido Hooiveld ★ 4.1k
1
vote
4
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4.3k
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problem with retrieving UniProt annotation data
uniprot.ws uniprot
updated 10.0 years ago by ★ 7.2k • written 10.0 years ago by ★ 4.1k
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0
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4.3k
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Comment: C: problem with retrieving UniProt annotation data
10.0 years ago Guido Hooiveld ★ 4.1k
1
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1
reply
5.7k
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Answer: A: Proper way to build phenoData object?
10.0 years ago Guido Hooiveld ★ 4.1k
1
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1
reply
1.3k
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limma: advise needed on (nested?) design + interpretation of coefs
limm multiple factor design limma design matrix
updated 10.0 years ago by 52k • written 10.0 years ago by ★ 4.1k
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0
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5.1k
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Answer: A: how to extract "Gene type" from org.Mm.eg.db?
10.2 years ago Guido Hooiveld ★ 4.1k
8
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4
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5.1k
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how to extract "Gene type" from org.Mm.eg.db?
annotation org.Mm.eg.db
10.2 years ago Guido Hooiveld ★ 4.1k
0
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0
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5.1k
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Comment: C: how to extract "Gene type" from org.Mm.eg.db?
10.2 years ago Guido Hooiveld ★ 4.1k
1
vote
6
replies
3.8k
views
Limma: advice needed for best approach for joint paired and unpaired analyses in unbalanced intervention study
limma paired unpaired duplicateCorrelation
updated 10.3 years ago by ▴ 10 • written 10.3 years ago by ★ 4.1k
0
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1
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1.4k
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Answer: A: enrichment packages that accept t-stat (or related stat) as input
updated 10.3 years ago by 52k • written 11.5 years ago by ★ 4.1k
0
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1
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3.8k
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Comment: C: Limma: advice needed for best approach for joint paired and unpaired analyses in
10.3 years ago Guido Hooiveld ★ 4.1k
722 results • Page 11 of 15
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