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Comment: Comment: Light difference when using coef vs omit a group when compare 3 groups.
9 months ago Gordon Smyth 52k
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Comment: Comment: Light difference when using coef vs omit a group when compare 3 groups.
9 months ago Gordon Smyth 52k
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650
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Answer: Answer: Differentially expressed genes in monocle pseudotime
9 months ago Gordon Smyth 52k
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Answer: Answer: permutation test in edgeR
9 months ago Gordon Smyth 52k
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697
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Answer: Answer: Why is my gene not significantly differentially expressed?
9 months ago Gordon Smyth 52k
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Comment: Comment: Light difference when using coef vs omit a group when compare 3 groups.
9 months ago Gordon Smyth 52k
2
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1.6k
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Answer: Answer: Light difference when using coef vs omit a group when compare 3 groups.
9 months ago Gordon Smyth 52k
0
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0
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407
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Answer: Answer: Limma design matrix only showing 3/4 treatments?
10 months ago Gordon Smyth 52k
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Comment: Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
10 months ago Gordon Smyth 52k
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3.5k
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Comment: Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
10 months ago Gordon Smyth 52k
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544
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Comment: Comment: Regressing out batch effects
10 months ago Gordon Smyth 52k
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Comment: Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
10 months ago Gordon Smyth 52k
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1.9k
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Comment: Comment: limma models out of memory issue on Slurm HPC
10 months ago Gordon Smyth 52k
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774
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Comment: Comment: Using a change in a continuous explanatory variable to test changes in gene expr
10 months ago Gordon Smyth 52k
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1.9k
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Comment: Comment: limma models out of memory issue on Slurm HPC
10 months ago Gordon Smyth 52k
1
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1
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774
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Answer: Answer: Using a change in a continuous explanatory variable to test changes in gene expr
10 months ago Gordon Smyth 52k
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603
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Answer: Answer: edgeR analysis: glm functions and offset matrix
10 months ago Gordon Smyth 52k
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1.9k
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Comment: Comment: limma models out of memory issue on Slurm HPC
10 months ago Gordon Smyth 52k
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1.9k
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Comment: Comment: limma models out of memory issue on Slurm HPC
10 months ago Gordon Smyth 52k
0
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1.9k
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Comment: Comment: limma models out of memory issue on Slurm HPC
10 months ago Gordon Smyth 52k
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1.9k
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Comment: Comment: limma models out of memory issue on Slurm HPC
10 months ago Gordon Smyth 52k
0
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1.9k
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Comment: Comment: limma models out of memory issue on Slurm HPC
10 months ago Gordon Smyth 52k
0
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1.9k
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Comment: Comment: limma models out of memory issue on Slurm HPC
10 months ago Gordon Smyth 52k
0
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1.9k
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Comment: Comment: limma models out of memory issue on Slurm HPC
10 months ago Gordon Smyth 52k
1
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3.5k
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Comment: Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
10 months ago Gordon Smyth 52k
0
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1
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954
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Comment: Comment: Adjust RNA-seq counts (more than one batch variable) for plotting differentially
10 months ago Gordon Smyth 52k
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1
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954
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Answer: Answer: Adjust RNA-seq counts (more than one batch variable) for plotting differentially
10 months ago Gordon Smyth 52k
1
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0
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3.5k
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Comment: Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
10 months ago Gordon Smyth 52k
1
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2
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3.5k
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Comment: Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
10 months ago Gordon Smyth 52k
1
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1
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3.5k
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Comment: Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
10 months ago Gordon Smyth 52k
0
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0
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1.5k
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Comment: Comment: Differing results from plotMDS and PCAtools
10 months ago Gordon Smyth 52k
3
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2
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3.5k
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Comment: Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
10 months ago Gordon Smyth 52k
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0
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1.5k
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Comment: Comment: Differing results from plotMDS and PCAtools
10 months ago Gordon Smyth 52k
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0
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819
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Comment: Comment: Doing comparison of RNA-seq data using EdgeR
10 months ago Gordon Smyth 52k
2
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1
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3.5k
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Answer: Answer: The difference when using Limma compare between 3 conditions vs 2 conditions
10 months ago Gordon Smyth 52k
0
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1
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819
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Answer: Answer: Doing comparison of RNA-seq data using EdgeR
10 months ago Gordon Smyth 52k
2
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2
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1.5k
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Answer: Answer: Differing results from plotMDS and PCAtools
10 months ago Gordon Smyth 52k
2
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1
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2.0k
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Comment: Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
10 months ago Gordon Smyth 52k
1
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0
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974
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Answer: Answer: Microarray Limma Model fitting and DEG
10 months ago Gordon Smyth 52k
1
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0
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1.0k
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Comment: Comment: DEG Filtering
10 months ago Gordon Smyth 52k
0
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1
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974
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Answer: Answer: Microarray Limma Model fitting and DEG
10 months ago Gordon Smyth 52k
0
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1
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1.9k
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Comment: Comment: limma models out of memory issue on Slurm HPC
10 months ago Gordon Smyth 52k
2
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1
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1.9k
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Answer: Answer: limma models out of memory issue on Slurm HPC
10 months ago Gordon Smyth 52k
2
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1
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871
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Comment: Comment: Batch Effect Correction, Gene Filtering
10 months ago Gordon Smyth 52k
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0
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871
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Comment: Comment: Batch Effect Correction, Gene Filtering
10 months ago Gordon Smyth 52k
0
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0
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677
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Answer: Answer: Using splicing junction counts with edgeR/limma-voom
10 months ago Gordon Smyth 52k
2
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1
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2.0k
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Answer: Answer: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
10 months ago Gordon Smyth 52k
1
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1
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1.0k
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Comment: Comment: DEG Filtering
10 months ago Gordon Smyth 52k
1
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1
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1.0k
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Comment: Comment: DEG Filtering
10 months ago Gordon Smyth 52k
1
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0
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675
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Comment: Comment: edgeR, 3 x 2 design with a batch effect and contrasts
10 months ago Gordon Smyth 52k
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