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Answer: Answer: Are unequal sample sizes in differential gene expression (DGE) analysis a proble
5 months ago Gordon Smyth 52k
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Comment: Comment: limma technical repeat correction
5 months ago Gordon Smyth 52k
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Answer: Answer: Using voom-transformed counts for unsupervised analyses (PCA, Random Forest, Ela
5 months ago Gordon Smyth 52k
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298
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Answer: Answer: List of DEGs belonging to an Agilent-single color microarray experiment using Li
5 months ago Gordon Smyth 52k
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1.1k
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Answer: Answer: [How to construct a model.matrix ]
5 months ago Gordon Smyth 52k
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901
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Comment: Comment: Limma- Print-tip loess normalisation-printer layout information does not match M
5 months ago Gordon Smyth 52k
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901
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Answer: Answer: Limma- Print-tip loess normalisation-printer layout information does not match M
5 months ago Gordon Smyth 52k
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2.0k
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Comment: Comment: Differential Expression Analysis with unbalanced batches without replication bet
5 months ago Gordon Smyth 52k
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2.0k
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Answer: Answer: Differential Expression Analysis with unbalanced batches without replication bet
5 months ago Gordon Smyth 52k
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1.9k
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Answer: Answer: Combining RNAseq and microarray data using edgeR/limma-voom
5 months ago Gordon Smyth 52k
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1.1k
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Answer: Answer: Consistent Decimals In Data After Antibody Array Background Correction Using Lim
5 months ago Gordon Smyth 52k
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2.2k
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Comment: Comment: limma technical repeat correction
6 months ago • updated 5 months ago Gordon Smyth 52k
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2.2k
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Comment: Comment: limma technical repeat correction
6 months ago Gordon Smyth 52k
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2.2k
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Comment: Comment: limma technical repeat correction
6 months ago Gordon Smyth 52k
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980
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Comment: Comment: Analysis of 2*4 factorial design
6 months ago Gordon Smyth 52k
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2.5k
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Comment: Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
6 months ago Gordon Smyth 52k
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817
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Comment: Comment: RNA-seq: samples form different experiments, how to do DGEs?
6 months ago Gordon Smyth 52k
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1.5k
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Comment: Comment: Zero intra-block correlation in RRBS analysis using voomLmFit with block
6 months ago Gordon Smyth 52k
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817
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Answer: Answer: RNA-seq: samples form different experiments, how to do DGEs?
6 months ago Gordon Smyth 52k
2
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1
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980
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Answer: Answer: Analysis of 2*4 factorial design
6 months ago Gordon Smyth 52k
1
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1
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1.5k
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Comment: Comment: Zero intra-block correlation in RRBS analysis using voomLmFit with block
6 months ago Gordon Smyth 52k
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2
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2.2k
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Answer: Answer: limma technical repeat correction
6 months ago Gordon Smyth 52k
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1.7k
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Comment: Comment: LIMMA Differing P-Values for Treatment-Contrast Parameterization vs Group-Means
6 months ago Gordon Smyth 52k
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1.7k
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Comment: Comment: LIMMA Differing P-Values for Treatment-Contrast Parameterization vs Group-Means
6 months ago Gordon Smyth 52k
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1.7k
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Comment: Comment: LIMMA Differing P-Values for Treatment-Contrast Parameterization vs Group-Means
6 months ago Gordon Smyth 52k
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1.7k
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Answer: Answer: LIMMA Differing P-Values for Treatment-Contrast Parameterization vs Group-Means
6 months ago Gordon Smyth 52k
2
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1
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1.5k
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Answer: Answer: Zero intra-block correlation in RRBS analysis using voomLmFit with block
6 months ago Gordon Smyth 52k
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2.0k
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Comment: Comment: Bioconductor 3.20 Release Schedule
6 months ago Gordon Smyth 52k
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2
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2.0k
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Answer: Answer: Bioconductor 3.20 Release Schedule
6 months ago Gordon Smyth 52k
1
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587
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Answer: Answer: Automatically generate contrasts from a model matrix / formula
6 months ago Gordon Smyth 52k
2
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489
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Answer: Answer: How to subset voomLmFit (MArrayLM) object?
6 months ago Gordon Smyth 52k
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498
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Answer: Answer: edgeR 4.2.1 compression bug: a minimally reproducible snippet
6 months ago Gordon Smyth 52k
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577
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Answer: Answer: EdgeR - Apparent Wrong Direction of logFC with Low Count Data
7 months ago Gordon Smyth 52k
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633
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Comment: Comment: Question on performing ANOVA-like analysis using limma
7 months ago Gordon Smyth 52k
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633
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Answer: Answer: Question on performing ANOVA-like analysis using limma
7 months ago Gordon Smyth 52k
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1.1k
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Comment: Comment: AffylmGUI does not start wit R 4.4.1
7 months ago Gordon Smyth 52k
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1.1k
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Comment: Comment: AffylmGUI does not start wit R 4.4.1
7 months ago Gordon Smyth 52k
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1.1k
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Comment: Comment: AffylmGUI does not start wit R 4.4.1
7 months ago Gordon Smyth 52k
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652
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Answer: Answer: Help with design matrix for RNA-seq data using edgeR
7 months ago Gordon Smyth 52k
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1.1k
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Comment: Comment: Seeking Advice on Using edgeR and variancePartition for RNA-seq Data from Multip
8 months ago Gordon Smyth 52k
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1.1k
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Comment: Comment: Seeking Advice on Using edgeR and variancePartition for RNA-seq Data from Multip
8 months ago Gordon Smyth 52k
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1
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1.1k
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Answer: Answer: Seeking Advice on Using edgeR and variancePartition for RNA-seq Data from Multip
8 months ago Gordon Smyth 52k
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1.1k
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Comment: Comment: Seeking Advice on Using edgeR and variancePartition for RNA-seq Data from Multip
8 months ago Gordon Smyth 52k
3
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0
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776
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Answer: Answer: voom does not seem to properly correct for library size
8 months ago Gordon Smyth 52k
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2
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1.1k
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Answer: Answer: AffylmGUI does not start wit R 4.4.1
8 months ago Gordon Smyth 52k
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0
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1.2k
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Answer: Answer: RNASeq normlization for samples with global shift in gene expression
8 months ago Gordon Smyth 52k
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0
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733
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Answer: Answer: Differential expression analysis in time course experiments with DESeq2
8 months ago Gordon Smyth 52k
3
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925
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Answer: Answer: using limma trend workflow in CAMERA
8 months ago Gordon Smyth 52k
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0
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800
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Comment: Comment: One-sided tests with CAMERA-PR
8 months ago Gordon Smyth 52k
2
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1
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800
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Answer: Answer: One-sided tests with CAMERA-PR
8 months ago Gordon Smyth 52k
5,229 results • Page 2 of 105
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