Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
1
vote
1
reply
361
views
Answer: Answer: EdgeR Biological CVs
12 days ago • updated 8 days ago Gordon Smyth 52k
1
vote
0
replies
320
views
Answer: Answer: Differential variability modelling with vst() expression
22 days ago Gordon Smyth 52k
0
votes
1
reply
896
views
Comment: Comment: Incorporating Salmon offset matrix into Wilcoxon DEG analysis
27 days ago • updated 26 days ago Gordon Smyth 52k
0
votes
1
reply
264
views
Answer: Answer: Mean variance curve troubleshoot filtering
27 days ago Gordon Smyth 52k
1
vote
1
reply
565
views
Comment: Comment: How do I fix an odd voom plot in a combined dataset?
27 days ago • updated 26 days ago Gordon Smyth 52k
0
votes
1
reply
896
views
Comment: Comment: Incorporating Salmon offset matrix into Wilcoxon DEG analysis
28 days ago • updated 27 days ago Gordon Smyth 52k
0
votes
1
reply
896
views
Comment: Comment: Incorporating Salmon offset matrix into Wilcoxon DEG analysis
29 days ago • updated 27 days ago Gordon Smyth 52k
2
votes
1
reply
565
views
Answer: Answer: How do I fix an odd voom plot in a combined dataset?
4 weeks ago Gordon Smyth 52k
1
vote
1
reply
896
views
Answer: Answer: Incorporating Salmon offset matrix into Wilcoxon DEG analysis
4 weeks ago Gordon Smyth 52k
0
votes
0
replies
3.2k
views
Comment: Comment: edgeR + tximport: calcNormFactors and the usage of offsets
4 weeks ago Gordon Smyth 52k
0
votes
1
reply
485
views
Answer: Answer: Cross-validation with multiple control subgroups in limma
6 weeks ago Gordon Smyth 52k
0
votes
0
replies
845
views
Comment: Comment: Normalizing batch effects using technical replicates for DGE analysis between tw
6 weeks ago Gordon Smyth 52k
0
votes
1
reply
845
views
Comment: Comment: Normalizing batch effects using technical replicates for DGE analysis between tw
6 weeks ago Gordon Smyth 52k
1
vote
1
reply
845
views
Answer: Answer: Normalizing batch effects using technical replicates for DGE analysis between tw
6 weeks ago Gordon Smyth 52k
0
votes
0
replies
1.4k
views
Answer: Answer: Limma - using both array and spot weights in lmFit
6 weeks ago Gordon Smyth 52k
1
vote
0
replies
1.1k
views
Comment: Comment: Feature Counts - potential bug with outfile.jcounts
7 weeks ago Gordon Smyth 52k
1
vote
2
replies
1.1k
views
Answer: Answer: Feature Counts - potential bug with outfile.jcounts
7 weeks ago Gordon Smyth 52k
0
votes
0
replies
534
views
Answer: Answer: Feature Counts -R XS Read Assignment Tag
7 weeks ago Gordon Smyth 52k
0
votes
1
reply
328
views
Answer: Answer: Advice needed: Using limma for differential pathway analysis with continuous dis
7 weeks ago Gordon Smyth 52k
3
votes
1
reply
755
views
Answer: Answer: RSubread output significantly different from bash Subread output
7 weeks ago Gordon Smyth 52k
0
votes
1
reply
497
views
Answer: Answer: sva: get a sv for RIN scores
8 weeks ago Gordon Smyth 52k
0
votes
1
reply
962
views
Comment: Comment: Differential Expression Genes as Independent Variables
8 weeks ago Gordon Smyth 52k
1
vote
2
replies
433
views
Answer: Answer: contrast matrix design for a continuous variable
8 weeks ago Gordon Smyth 52k
0
votes
1
reply
962
views
Comment: Comment: Differential Expression Genes as Independent Variables
9 weeks ago Gordon Smyth 52k
2
votes
3
replies
646
views
Answer: Answer: Crossover design with limma
9 weeks ago • updated 6 weeks ago Gordon Smyth 52k
0
votes
1
reply
962
views
Answer: Answer: Differential Expression Genes as Independent Variables
9 weeks ago Gordon Smyth 52k
1
vote
1
reply
2.6k
views
Comment: Comment: What type of counts data to import for performing Isoform analysis in edgeR
9 weeks ago • updated 8 weeks ago Gordon Smyth 52k
1
vote
1
reply
2.6k
views
Answer: Answer: What type of counts data to import for performing Isoform analysis in edgeR
9 weeks ago Gordon Smyth 52k
0
votes
1
reply
2.6k
views
Comment: Comment: What type of counts data to import for performing Isoform analysis in edgeR
9 weeks ago Gordon Smyth 52k
1
vote
0
replies
944
views
Comment: Comment: ANOVA like approach of edgeR
9 weeks ago Gordon Smyth 52k
3
votes
1
reply
944
views
Answer: Answer: ANOVA like approach of edgeR
10 weeks ago Gordon Smyth 52k
0
votes
1
reply
459
views
Answer: Answer: Create Illmina bead summary data
10 weeks ago • updated 9 weeks ago Gordon Smyth 52k
1
vote
0
replies
582
views
Comment: Comment: Is it recommended to analyze different tissues together when using edgeR
10 weeks ago Gordon Smyth 52k
2
votes
1
reply
582
views
Answer: Answer: Is it recommended to analyze different tissues together when using edgeR
10 weeks ago Gordon Smyth 52k
0
votes
0
replies
316
views
Answer: Answer: Are unequal sample sizes in differential gene expression (DGE) analysis a proble
10 weeks ago Gordon Smyth 52k
0
votes
1
reply
1.8k
views
Comment: Comment: limma technical repeat correction
10 weeks ago Gordon Smyth 52k
2
votes
0
replies
602
views
Answer: Answer: Using voom-transformed counts for unsupervised analyses (PCA, Random Forest, Ela
10 weeks ago Gordon Smyth 52k
0
votes
0
replies
220
views
Answer: Answer: List of DEGs belonging to an Agilent-single color microarray experiment using Li
10 weeks ago Gordon Smyth 52k
1
vote
1
reply
928
views
Answer: Answer: [How to construct a model.matrix ]
11 weeks ago • updated 10 weeks ago Gordon Smyth 52k
1
vote
1
reply
689
views
Comment: Comment: Limma- Print-tip loess normalisation-printer layout information does not match M
11 weeks ago Gordon Smyth 52k
2
votes
1
reply
689
views
Answer: Answer: Limma- Print-tip loess normalisation-printer layout information does not match M
11 weeks ago Gordon Smyth 52k
1
vote
1
reply
1.7k
views
Comment: Comment: Differential Expression Analysis with unbalanced batches without replication bet
12 weeks ago Gordon Smyth 52k
1
vote
1
reply
1.7k
views
Answer: Answer: Differential Expression Analysis with unbalanced batches without replication bet
12 weeks ago • updated 11 weeks ago Gordon Smyth 52k
1
vote
1
reply
1.3k
views
Answer: Answer: Combining RNAseq and microarray data using edgeR/limma-voom
12 weeks ago Gordon Smyth 52k
1
vote
1
reply
984
views
Answer: Answer: Consistent Decimals In Data After Antibody Array Background Correction Using Lim
12 weeks ago Gordon Smyth 52k
1
vote
1
reply
1.8k
views
Comment: Comment: limma technical repeat correction
3 months ago • updated 12 weeks ago Gordon Smyth 52k
1
vote
1
reply
1.8k
views
Comment: Comment: limma technical repeat correction
3 months ago Gordon Smyth 52k
0
votes
1
reply
1.8k
views
Comment: Comment: limma technical repeat correction
3 months ago Gordon Smyth 52k
2
votes
0
replies
846
views
Comment: Comment: Analysis of 2*4 factorial design
3 months ago Gordon Smyth 52k
1
vote
0
replies
2.0k
views
Comment: Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
3 months ago Gordon Smyth 52k
5,213 results • Page 1 of 105
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6