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limma-voom group design and its effect on sva
limma voom group-design sva
5.0 years ago kentfung ▴ 20
1
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0
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1.7k
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Comment: C: Variance unstable after fitting to linear model with limma-voom pipeline
5.1 years ago kentfung ▴ 20
1
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1
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1.7k
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Variance unstable after fitting to linear model with limma-voom pipeline
limma voom
5.1 years ago kentfung ▴ 20
0
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0
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1.5k
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Comment: C: How an index is built for each gene set collections using buildCustomIdx() index
5.2 years ago kentfung ▴ 20
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1
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1.1k
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Comment: C: Design matrix with intercept for multiple cluster comparison
5.2 years ago kentfung ▴ 20
4
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5
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1.1k
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Design matrix with intercept for multiple cluster comparison
limma sva
updated 5.2 years ago by • 0 • written 5.2 years ago by ▴ 20
0
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1
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1.1k
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Comment: C: Design matrix with intercept for multiple blocks comparison
5.2 years ago kentfung ▴ 20
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3
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1.1k
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Design matrix for cohort with samples outside "block"
limma voom sva
5.3 years ago kentfung ▴ 20
0
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0
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1.1k
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Comment: C: Design matrix for cohort with samples outside "block"
5.3 years ago kentfung ▴ 20
0
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1
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1.1k
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Comment: C: Design matrix for cohort with samples outside "block"
5.3 years ago kentfung ▴ 20
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0
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2.0k
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Comment: C: Finding genes in a gene set detected by ROAST (or FRY) in limma
5.4 years ago kentfung ▴ 20
2
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2
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2.0k
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Finding genes in a gene set detected by ROAST (or FRY) in limma
roast fry limma
updated 5.4 years ago by 51k • written 5.4 years ago by ▴ 20
0
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0
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1.1k
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Including sva results in SeqGSEA with data with batch effect
limma deseq2 seqgsea sva deseq
5.4 years ago kentfung ▴ 20
0
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0
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1.0k
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Comment: C: Batch effect correction for class detection
6.2 years ago kentfung ▴ 20
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2
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1.0k
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Batch effect correction for class detection
batch effect unsupervised
updated 6.2 years ago by 67k • written 6.2 years ago by ▴ 20
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1
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3.9k
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Comment: C: Looking for Batch effects in PCA
6.2 years ago kentfung ▴ 20
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