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0
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1
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569
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Comment: Comment: Different Shrunk Log2FC according with reference
11 months ago andrebolerbarros ▴ 20
1
vote
3
replies
569
views
Different Shrunk Log2FC according with reference
DESeq2
updated 11 months ago by 43k • written 11 months ago by ▴ 20
0
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1
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562
views
Comment: Comment: Interaction Terms in DESeq2 - Shrinkage
12 months ago andrebolerbarros ▴ 20
0
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3
replies
562
views
Interaction Terms in DESeq2 - Shrinkage
DESeq2
updated 12 months ago by 43k • written 12 months ago by ▴ 20
0
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1
reply
650
views
Comment: Comment: DESeq2 - Plot Nr. Genes vs Variance explained in PCA
13 months ago andrebolerbarros ▴ 20
2
votes
3
replies
650
views
DESeq2 - Plot Nr. Genes vs Variance explained in PCA
DESeq2
updated 13 months ago by 43k • written 13 months ago by ▴ 20
0
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0
replies
818
views
Comment: Comment: Biomart - upstream region of 'coding'
19 months ago andrebolerbarros ▴ 20
0
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2
replies
818
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Biomart - upstream region of 'coding'
biomaRt
updated 19 months ago by ★ 6.6k • written 19 months ago by ▴ 20
0
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1
reply
807
views
Comment: Comment: p-value<0.05 for a gene with zero counts?
21 months ago andrebolerbarros ▴ 20
0
votes
3
replies
807
views
p-value<0.05 for a gene with zero counts?
DESeq2
updated 21 months ago by 43k • written 21 months ago by ▴ 20
0
votes
3
replies
1.3k
views
DESeq2 with nbinomGLM issues
DESeq2
updated 22 months ago by 43k • written 22 months ago by ▴ 20
0
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0
replies
1.3k
views
Comment: Comment: DESeq2 with nbinomGLM issues
22 months ago andrebolerbarros ▴ 20
0
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0
replies
1.3k
views
Comment: Comment: DESEq2 Error: rows did not converge
22 months ago andrebolerbarros ▴ 20
0
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1
reply
1.3k
views
Comment: Comment: DESEq2 Error: rows did not converge
22 months ago andrebolerbarros ▴ 20
0
votes
4
replies
1.3k
views
DESEq2 Error: rows did not converge
DESeq2
22 months ago andrebolerbarros ▴ 20
1
vote
1
reply
866
views
Subsetting DESeq when different cell types
DESeq2 RNASeq
updated 2.1 years ago by ★ 4.8k • written 2.1 years ago by ▴ 20
0
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0
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1.2k
views
Comment: Comment: PCA subset of genes vs DE
2.1 years ago andrebolerbarros ▴ 20
0
votes
2
replies
1.2k
views
PCA subset of genes vs DE
DESeq2 RNASeq
2.1 years ago andrebolerbarros ▴ 20
2
votes
1
reply
960
views
Subsetting a DESeq object - gene-wise dispersions
DESeq2
updated 2.7 years ago by ★ 4.8k • written 2.7 years ago by ▴ 20
0
votes
1
reply
2.9k
views
Comment: Comment: Warnings when using "ashr" in lfcshrinkage for DESeq2
2.9 years ago andrebolerbarros ▴ 20
3
votes
9
replies
2.9k
views
Warnings when using "ashr" in lfcshrinkage for DESeq2
RNASeq DESeq2
updated 2.3 years ago by • 0 • written 2.9 years ago by ▴ 20
0
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0
replies
2.9k
views
Comment: Comment: Warnings when using "ashr" in lfcshrinkage for DESeq2
2.9 years ago andrebolerbarros ▴ 20
0
votes
1
reply
2.9k
views
Comment: Comment: Warnings when using "ashr" in lfcshrinkage for DESeq2
2.9 years ago andrebolerbarros ▴ 20
0
votes
1
reply
2.1k
views
Comment: Comment: Using vegan::betadisper for determing if I subset my design for DESeq2
4.2 years ago andrebolerbarros ▴ 20
0
votes
1
reply
1.3k
views
Comment: C: Java & DESeq2
5.0 years ago andrebolerbarros ▴ 20
0
votes
1
reply
1.3k
views
Comment: C: Java & DESeq2
5.0 years ago andrebolerbarros ▴ 20
0
votes
0
replies
1.3k
views
Comment: C: Java & DESeq2
5.0 years ago andrebolerbarros ▴ 20
0
votes
2
replies
1.3k
views
Comment: C: Java & DESeq2
5.0 years ago andrebolerbarros ▴ 20
0
votes
1
reply
1.3k
views
Comment: C: Java & DESeq2
5.0 years ago andrebolerbarros ▴ 20
0
votes
10
replies
1.3k
views
Java & DESeq2
deseq2
updated 5.0 years ago by 43k • written 5.0 years ago by ▴ 20
0
votes
1
reply
29k
views
Comment: C: z-score with DESeq2?
5.7 years ago andrebolerbarros ▴ 20
0
votes
0
replies
844
views
Comment: C: estimateSizeFactors after subsetting?
5.8 years ago andrebolerbarros ▴ 20
1
vote
3
replies
844
views
estimateSizeFactors after subsetting?
deseq2
updated 5.8 years ago by 43k • written 5.8 years ago by ▴ 20
1
vote
3
replies
29k
views
z-score with DESeq2?
deseq2
updated 6.0 years ago by 43k • written 6.0 years ago by ▴ 20
0
votes
1
reply
2.1k
views
Comment: C: Using vegan::betadisper for determing if I subset my design for DESeq2
6.0 years ago andrebolerbarros ▴ 20
3
votes
5
replies
2.1k
views
Using vegan::betadisper for determing if I subset my design for DESeq2
deseq2
updated 4.2 years ago by ▴ 260 • written 6.0 years ago by ▴ 20
0
votes
1
reply
2.1k
views
Comment: C: DESeq2 for QuantSeq data
6.1 years ago andrebolerbarros ▴ 20
1
vote
3
replies
2.1k
views
DESeq2 for QuantSeq data
deseq2
updated 6.1 years ago by ▴ 20 • written 6.1 years ago by ▴ 20
0
votes
1
reply
887
views
When should I use betaprior=T
deseq2
updated 6.4 years ago by 43k • written 6.4 years ago by ▴ 20
6
votes
8
replies
3.6k
views
alpha in lfcshrink?
deseq2
updated 4.0 years ago by ▴ 80 • written 6.4 years ago by ▴ 20
0
votes
1
reply
947
views
Comment: C: Pre-filtering results influence on downstream analysis
6.4 years ago andrebolerbarros ▴ 20
0
votes
3
replies
947
views
Pre-filtering results influence on downstream analysis
deseq2 rnaseq
updated 6.4 years ago by 43k • written 6.4 years ago by ▴ 20
0
votes
0
replies
1.9k
views
Comment: C: Import_biom with tree problem
6.5 years ago andrebolerbarros ▴ 20
0
votes
1
reply
1.9k
views
Import_biom with tree problem
phyloseq mothur 16s
6.5 years ago andrebolerbarros ▴ 20
0
votes
0
replies
4.7k
views
Comment: C: DESeq2 - Differences between plotCounts and normalized counts
6.7 years ago andrebolerbarros ▴ 20
0
votes
2
replies
4.7k
views
Comment: C: DESeq2 - Differences between plotCounts and normalized counts
6.7 years ago andrebolerbarros ▴ 20
0
votes
1
reply
4.7k
views
Comment: C: DESeq2 - Differences between plotCounts and normalized counts
6.7 years ago andrebolerbarros ▴ 20
0
votes
1
reply
4.7k
views
Comment: C: DESeq2 - Differences between plotCounts and normalized counts
6.7 years ago andrebolerbarros ▴ 20
2
votes
10
replies
4.7k
views
DESeq2 - Differences between plotCounts and normalized counts
deseq2
updated 18 months ago by 43k • written 6.7 years ago by ▴ 20
0
votes
0
replies
1.9k
views
Comment: C: DESeq2 - v1.18 different p-values from v1.20 (Is it minmu?)
6.7 years ago andrebolerbarros ▴ 20
58 results • Page 1 of 2
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