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Comment: C: How to know what genes are differentially expression in DESeq2 simulation?
4.5 years ago Kevin Blighe ★ 4.0k
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3.1k
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Comment: C: How to know if I should use voomWithQualityWeights() or not?
4.6 years ago Kevin Blighe ★ 4.0k
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1
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3.1k
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Comment: C: How to know if I should use voomWithQualityWeights() or not?
4.6 years ago Kevin Blighe ★ 4.0k
1
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1.1k
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Answer: A: Joint pathway Analysis using both gene and metabolite data sets
4.6 years ago Kevin Blighe ★ 4.0k
0
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0
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465
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Answer: A: TPP- data input
4.6 years ago Kevin Blighe ★ 4.0k
0
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0
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851
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Answer: A: multifactor desing with interaction LRT or Wald test?
4.6 years ago Kevin Blighe ★ 4.0k
0
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0
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815
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Comment: C: How to use panelcn.mops to detect CNVs from whole genome data by getting count w
4.6 years ago Kevin Blighe ★ 4.0k
1
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1
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1.1k
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Comment: C: package to analyze generic protein microarray data
4.6 years ago Kevin Blighe ★ 4.0k
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1.5k
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Comment: C: In DESeq2, how do you interpret results based on the order of variables in the "
4.6 years ago Kevin Blighe ★ 4.0k
1
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1
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1.5k
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Answer: A: In DESeq2, how do you interpret results based on the order of variables in the "
4.6 years ago Kevin Blighe ★ 4.0k
0
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1
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2.0k
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Comment: C: Is there a way to use cytofkit on R version 3.6.3?
4.6 years ago Kevin Blighe ★ 4.0k
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0
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684
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Answer: A: Installation problems -Installation path not writeable
4.6 years ago Kevin Blighe ★ 4.0k
2
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1.7k
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Answer: A: Level 3 TCGA tumor samples
4.6 years ago Kevin Blighe ★ 4.0k
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2.6k
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Comment: C: extract TCGA barcodes and sample_type information from uuids
4.6 years ago Kevin Blighe ★ 4.0k
0
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0
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1.0k
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Comment: C: Suggestion for circlize package in R for plotting the datasets
4.6 years ago Kevin Blighe ★ 4.0k
1
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1
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1.2k
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Answer: A: How to create better separation in PCA plot
4.6 years ago Kevin Blighe ★ 4.0k
1
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1
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5.4k
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Comment: C: Finding enriched pathways from a gene list.
4.6 years ago Kevin Blighe ★ 4.0k
1
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1
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5.4k
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Comment: C: Finding enriched pathways from a gene list.
4.6 years ago Kevin Blighe ★ 4.0k
0
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1
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1.0k
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Answer: A: Problem for loading Bioconductor package in R
4.6 years ago Kevin Blighe ★ 4.0k
0
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2
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2.6k
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Answer: A: extract TCGA barcodes and sample_type information from uuids
4.6 years ago Kevin Blighe ★ 4.0k
3
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1
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5.0k
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Answer: A: [WGCNA]How to visualize network of genes in one module
4.6 years ago Kevin Blighe ★ 4.0k
0
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1
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3.7k
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Comment: C: Change axis scale for plotting PCA in DESeq2
4.6 years ago Kevin Blighe ★ 4.0k
0
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0
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1.1k
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Comment: C: Replace special characters with another in row names
4.7 years ago Kevin Blighe ★ 4.0k
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0
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680
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Comment: C: Species, supported by the clusterProfiler package
4.7 years ago Kevin Blighe ★ 4.0k
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1.6k
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Comment: C: Skewed beta-distribution from Methylation EPIC array data
4.7 years ago Kevin Blighe ★ 4.0k
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1
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1.7k
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Comment: C: analysis of multiple time points * 2 replicates of scRNA-seq
4.7 years ago Kevin Blighe ★ 4.0k
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0
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4.5k
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Comment: C: DESeq2 for survival analysis
4.7 years ago Kevin Blighe ★ 4.0k
1
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0
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12k
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Answer: A: Install Bioconductor in R studio
4.8 years ago Kevin Blighe ★ 4.0k
1
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1
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1.1k
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Answer: A: Library for Node Influence package
4.8 years ago Kevin Blighe ★ 4.0k
0
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0
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1.2k
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Answer: A: Batch correction in Linear Models for methylation data
4.8 years ago Kevin Blighe ★ 4.0k
1
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0
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1.2k
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Comment: C: DEsingle differential-expression analysis
4.9 years ago Kevin Blighe ★ 4.0k
0
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1
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4.5k
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Comment: C: DESeq2 for survival analysis
4.9 years ago Kevin Blighe ★ 4.0k
2
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1
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2.8k
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Answer: A: problems with "hclust" installation
4.9 years ago Kevin Blighe ★ 4.0k
0
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0
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2.8k
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Comment: C: problems with "hclust" installation
4.9 years ago Kevin Blighe ★ 4.0k
0
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0
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5.1k
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Comment: C: Principle component analysis plot with gene expression data
4.9 years ago Kevin Blighe ★ 4.0k
0
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0
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2.1k
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Comment: C: RNAseq read counts generated by FeatureCounts
4.9 years ago Kevin Blighe ★ 4.0k
1
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0
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2.3k
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Answer: A: Question regarding "low counts" in DESeq2
4.9 years ago Kevin Blighe ★ 4.0k
1
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1
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2.2k
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Comment: C: How I interpret this plot from pathview
4.9 years ago Kevin Blighe ★ 4.0k
2
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1
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2.2k
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Answer: A: How I interpret this plot from pathview
4.9 years ago Kevin Blighe ★ 4.0k
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0
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418
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Answer: A: A question about the results of DESeq2
4.9 years ago Kevin Blighe ★ 4.0k
0
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0
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1.1k
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Comment: C: In SVA, the percent of biological variable of interest didnot change after addin
4.9 years ago Kevin Blighe ★ 4.0k
0
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0
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963
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Comment: C: plotEigengeneNetworks WGCNA add ME labels to left side of figure
4.9 years ago Kevin Blighe ★ 4.0k
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2
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1.1k
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Answer: A: RNAseq PCA resembles subject-specific effect in a paired study design
4.9 years ago Kevin Blighe ★ 4.0k
0
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1
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3.0k
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Comment: C: DESeq2 PC1 variance on the PCA plot does not match proportion of variance
4.9 years ago Kevin Blighe ★ 4.0k
2
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0
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1.2k
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Comment: C: Diffbind for regressing multiple confounding variables (blocking factors)
4.9 years ago Kevin Blighe ★ 4.0k
0
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1
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466
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Answer: A: Multi-group design when performing DE analysis
4.9 years ago Kevin Blighe ★ 4.0k
0
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1
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1.1k
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Comment: C: In SVA, the percent of biological variable of interest didnot change after addin
4.9 years ago Kevin Blighe ★ 4.0k
3
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0
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1.6k
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Comment: C: batch effect correction for TCGA RNAseq harmonized data
4.9 years ago Kevin Blighe ★ 4.0k
0
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0
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2.0k
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Comment: C: Is there a way to save and open an expression set?
4.9 years ago Kevin Blighe ★ 4.0k
3
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1
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2.0k
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Answer: A: Is there a way to save and open an expression set?
4.9 years ago Kevin Blighe ★ 4.0k
889 results • Page 16 of 18
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