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Comment: Comment: DESeq2 output used for PCA plot on R studio
5 months ago Kevin Blighe ★ 4.0k
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Answer: Answer: Difference between vst() and varianceStabilizingTransform()
9 months ago Kevin Blighe ★ 4.0k
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1.3k
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Comment: Comment: scRNA-seq as pseudobulk for DEseq2: does AggregateExpression() normalize counts?
9 months ago Kevin Blighe ★ 4.0k
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2.7k
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Comment: Comment: DESeq2 - groups with biological replicates from the same patient
updated 8 months ago by 4.0k • written 10 months ago by ★ 4.0k
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1
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2.7k
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Comment: Comment: DESeq2 - groups with biological replicates from the same patient
10 months ago Kevin Blighe ★ 4.0k
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2
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2.7k
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Comment: Comment: DESeq2 - groups with biological replicates from the same patient
10 months ago Kevin Blighe ★ 4.0k
0
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1
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2.7k
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Comment: Comment: DESeq2 - groups with biological replicates from the same patient
10 months ago Kevin Blighe ★ 4.0k
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1
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1.4k
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Comment: Comment: Ensembl down???
10 months ago Kevin Blighe ★ 4.0k
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0
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2.5k
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Comment: Comment: tximport error: vroom
12 months ago Kevin Blighe ★ 4.0k
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0
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2.1k
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Comment: Comment: PCA percent variance DESeq2
13 months ago Kevin Blighe ★ 4.0k
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419
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Answer: Answer: DEG by deseq2 by Race
13 months ago Kevin Blighe ★ 4.0k
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0
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820
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Comment: Comment: affy package and SNP arrays
15 months ago Kevin Blighe ★ 4.0k
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1
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1.5k
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Answer: Answer: enhanced volcano , different -log10pvalue of the same gene
16 months ago Kevin Blighe ★ 4.0k
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0
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2.3k
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Comment: Comment: EnhancedVolcano - Unable to customize the length of Connectors to Gene Labels
17 months ago Kevin Blighe ★ 4.0k
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2.3k
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Comment: Comment: EnhancedVolcano - Unable to customize the length of Connectors to Gene Labels
17 months ago Kevin Blighe ★ 4.0k
1
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1
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2.3k
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Answer: Answer: EnhancedVolcano - Unable to customize the length of Connectors to Gene Labels
17 months ago Kevin Blighe ★ 4.0k
0
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0
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872
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Comment: Comment: How to import dataset from other software into DESeq2?
18 months ago Kevin Blighe ★ 4.0k
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4.4k
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Comment: Comment: How to change the dot size in plotPCA?
18 months ago Kevin Blighe ★ 4.0k
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0
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658
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Comment: Comment: Microarray Data - Matching Probe ID's to Gene Expression Symbols
19 months ago Kevin Blighe ★ 4.0k
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0
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666
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Answer: Answer: BioC packages in cancer genomics
19 months ago Kevin Blighe ★ 4.0k
2
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0
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1.4k
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Answer: Answer: Overlay points with EnhancedVolcano R
19 months ago Kevin Blighe ★ 4.0k
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0
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803
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Answer: Answer: Only display positive FC on volcano plot
19 months ago Kevin Blighe ★ 4.0k
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0
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2.2k
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Comment: Comment: How can I avoid artifacts in gene set/pathway scoring by UCell and similar algor
19 months ago Kevin Blighe ★ 4.0k
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6.9k
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Comment: Comment: gene ID conversion
19 months ago Kevin Blighe ★ 4.0k
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0
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1.4k
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Comment: Comment: Adding ellipse in PCAtools biplot
20 months ago Kevin Blighe ★ 4.0k
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1
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1.4k
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Answer: Answer: Adding ellipse in PCAtools biplot
20 months ago Kevin Blighe ★ 4.0k
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0
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1.2k
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Answer: Answer: PCA input data from DRAGEN RNA pipeline
22 months ago Kevin Blighe ★ 4.0k
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0
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637
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Answer: Answer: PCA plot, plus sign?
22 months ago Kevin Blighe ★ 4.0k
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1
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1.1k
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Answer: Answer: Is it possible for the legend labels to be different from the Colcustom names?
23 months ago Kevin Blighe ★ 4.0k
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0
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881
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Comment: Comment: RNA-Seq Reads Count
23 months ago Kevin Blighe ★ 4.0k
1
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0
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830
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Answer: Answer: creating a NOT gate for gating out a single quadrant in a quadrant gate openCyto
23 months ago Kevin Blighe ★ 4.0k
1
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1
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829
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Answer: Answer: Second covariate
23 months ago Kevin Blighe ★ 4.0k
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0
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1.2k
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Comment: Comment: Unable to over/ride colour scheme with custom key-value pairs
23 months ago Kevin Blighe ★ 4.0k
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0
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1.7k
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Comment: Comment: Biostrings multiple pattern match
24 months ago Kevin Blighe ★ 4.0k
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0
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2.0k
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Answer: Answer: Enhanced Volcano Error when drawing connectors
24 months ago Kevin Blighe ★ 4.0k
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1
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1.3k
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Answer: Answer: color scale ggcyto::autoplot
2.0 years ago Kevin Blighe ★ 4.0k
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0
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3.0k
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Comment: Comment: biomaRt finding transcript lenghts
2.1 years ago Kevin Blighe ★ 4.0k
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0
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733
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Comment: Comment: Interpret MetaVolcanoR plot
2.1 years ago Kevin Blighe ★ 4.0k
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0
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1.7k
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Comment: Comment: StringTie output as Ballgown input
2.3 years ago Kevin Blighe ★ 4.0k
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0
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1.5k
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Comment: Comment: I need cancer databases suggestion
2.3 years ago Kevin Blighe ★ 4.0k
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0
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3.6k
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Comment: Comment: KEGG Pathway in R
2.3 years ago Kevin Blighe ★ 4.0k
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0
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1.5k
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Comment: Comment: Italicise
2.3 years ago Kevin Blighe ★ 4.0k
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1
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1.5k
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Comment: Comment: Italicise
2.3 years ago Kevin Blighe ★ 4.0k
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1
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1.5k
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Comment: Comment: Italicise
2.3 years ago Kevin Blighe ★ 4.0k
0
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0
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974
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Comment: Comment: R: problem with running time-series analysis software: Mfuzz
2.4 years ago Kevin Blighe ★ 4.0k
1
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0
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3.1k
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Comment: Comment: Print EnhancedVolcano Plot as jpeg or similar in R Notebook
2.4 years ago Kevin Blighe ★ 4.0k
1
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1
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3.1k
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Comment: Comment: Print EnhancedVolcano Plot as jpeg or similar in R Notebook
2.4 years ago Kevin Blighe ★ 4.0k
1
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1
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3.1k
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Answer: Answer: Print EnhancedVolcano Plot as jpeg or similar in R Notebook
2.4 years ago Kevin Blighe ★ 4.0k
0
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0
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1.9k
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Comment: Comment: Handling NA values in limma's voom design matrix
2.4 years ago Kevin Blighe ★ 4.0k
0
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0
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941
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Comment: Comment: different sample size from each individual
2.4 years ago Kevin Blighe ★ 4.0k
889 results • Page 1 of 18
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