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Comment: C: Heatmap only including DE genes?
4.4 years ago Kevin Blighe ★ 4.0k
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382
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Answer: A: simulateSV using Granges generates the error of "No regions on given chromosomes
4.4 years ago Kevin Blighe ★ 4.0k
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1.1k
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Comment: C: Finding genes with loss of Heterozygosity
4.4 years ago Kevin Blighe ★ 4.0k
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1.1k
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Comment: C: Finding genes with loss of Heterozygosity
4.4 years ago Kevin Blighe ★ 4.0k
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1.4k
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Answer: A: Data Structure for Read Count Analysis by DESeq2
4.4 years ago Kevin Blighe ★ 4.0k
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1.5k
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Comment: C: Issue with Biomart- cannot access ensembl
4.4 years ago Kevin Blighe ★ 4.0k
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4
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1.1k
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Comment: C: Finding genes with loss of Heterozygosity
4.4 years ago Kevin Blighe ★ 4.0k
1
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1
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1.1k
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Answer: A: Finding genes with loss of Heterozygosity
4.4 years ago Kevin Blighe ★ 4.0k
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0
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1.9k
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Comment: C: DESeq2 annotation file
4.5 years ago Kevin Blighe ★ 4.0k
1
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1
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1.9k
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Comment: C: DESeq2 annotation file
4.5 years ago Kevin Blighe ★ 4.0k
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2.6k
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Comment: C: DESeq2 Error: package or namespace load failed for 'DESeq2'
4.5 years ago Kevin Blighe ★ 4.0k
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0
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846
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Comment: C: Normalization of RNA seq data
4.5 years ago Kevin Blighe ★ 4.0k
1
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3
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1.9k
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Comment: C: DESeq2 annotation file
4.5 years ago Kevin Blighe ★ 4.0k
0
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1
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1.9k
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Comment: C: DESeq2 annotation file
4.5 years ago Kevin Blighe ★ 4.0k
1
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1
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3.1k
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Answer: A: Heatmap only including DE genes?
4.5 years ago Kevin Blighe ★ 4.0k
0
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2
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1.9k
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Comment: C: DESeq2 annotation file
4.5 years ago Kevin Blighe ★ 4.0k
1
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0
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2.5k
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Comment: C: Alternative tools to perform GO enrichment on DE genes
4.5 years ago Kevin Blighe ★ 4.0k
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1
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1.1k
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Comment: C: Java & DESeq2
4.5 years ago Kevin Blighe ★ 4.0k
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0
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2.3k
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Comment: C: GO enrichment analysis with goana after performing DE analysis with glmTreat
4.5 years ago Kevin Blighe ★ 4.0k
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1
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1.9k
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Comment: C: DESeq2 annotation file
4.5 years ago Kevin Blighe ★ 4.0k
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1
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1.9k
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Answer: C: DESeq2 annotation file
4.5 years ago Kevin Blighe ★ 4.0k
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0
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753
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Answer: A: Gene Co-Expression Network using Pearsons Correlation
4.5 years ago Kevin Blighe ★ 4.0k
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1
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846
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Answer: A: Normalization of RNA seq data
4.5 years ago Kevin Blighe ★ 4.0k
0
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0
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1.5k
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Comment: C: Topgo, Deseq and KEGG pathway
4.5 years ago Kevin Blighe ★ 4.0k
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1
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1.5k
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Answer: A: Topgo, Deseq and KEGG pathway
4.5 years ago Kevin Blighe ★ 4.0k
1
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1
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654
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Answer: A: BioMart Error 28
4.5 years ago Kevin Blighe ★ 4.0k
0
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1
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2.6k
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Answer: A: annFUN error TOPGO
4.5 years ago Kevin Blighe ★ 4.0k
1
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0
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2.0k
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Comment: C: Need comments/advices for WGCNA network visualization
4.5 years ago Kevin Blighe ★ 4.0k
1
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1
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1.7k
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Comment: C: Can't install packages on R or via Bioconductor
4.5 years ago Kevin Blighe ★ 4.0k
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1
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2.0k
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Comment: C: Need comments/advices for WGCNA network visualization
4.5 years ago Kevin Blighe ★ 4.0k
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1
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2.0k
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Comment: C: Need comments/advices for WGCNA network visualization
4.5 years ago Kevin Blighe ★ 4.0k
0
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1
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3.5k
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Answer: C: Which of these (raw count, scaled estimate, normalized_results ) data of TCGA is
4.5 years ago Kevin Blighe ★ 4.0k
0
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1
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3.5k
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Comment: C: Which of these (raw count, scaled estimate, normalized_results ) data of TCGA is
4.5 years ago Kevin Blighe ★ 4.0k
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0
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723
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Comment: C: Affymetrix microarray - Limma on timepoint experiment, how to make the design an
4.5 years ago Kevin Blighe ★ 4.0k
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0
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954
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Comment: C: R circlize package problem with drawing histogram
4.5 years ago Kevin Blighe ★ 4.0k
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0
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2.0k
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Comment: C: How does DESeq2 calculate FPKM values when gene lengths are not supplied?
4.5 years ago Kevin Blighe ★ 4.0k
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0
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1.1k
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Comment: C: Enhanced volcanoplots from DESeq2
4.5 years ago Kevin Blighe ★ 4.0k
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1
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1.1k
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Answer: A: Enhanced volcanoplots from DESeq2
4.5 years ago Kevin Blighe ★ 4.0k
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0
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1.3k
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Answer: A: How do you know if your DESeq2 data has normal distribution?
4.5 years ago Kevin Blighe ★ 4.0k
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1
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1.2k
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Comment: C: Fonction of genes/metabolites in a pathway?
4.5 years ago Kevin Blighe ★ 4.0k
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1
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1.2k
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Answer: A: Fonction of genes/metabolites in a pathway?
4.5 years ago Kevin Blighe ★ 4.0k
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0
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615
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Comment: C: Why so few genes are returned?
4.5 years ago Kevin Blighe ★ 4.0k
0
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1
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507
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Answer: C: DEseq2 design tutorial with multiple experimental factors
4.5 years ago Kevin Blighe ★ 4.0k
1
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1
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3.1k
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Comment: C: How to extract phastcons score for all protein coding genes and lncRNAs using Ge
4.5 years ago Kevin Blighe ★ 4.0k
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0
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1.4k
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Comment: C: RNAseq analysis with edgeR-interaction terms and comparison within and between g
4.5 years ago Kevin Blighe ★ 4.0k
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0
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1.2k
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Comment: C: Nested paired design with covariates in limma
4.5 years ago Kevin Blighe ★ 4.0k
0
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0
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989
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Comment: C: Drug response pre- and post-treatment between timepoints across conditions
4.5 years ago Kevin Blighe ★ 4.0k
0
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1
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615
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Answer: A: Why so few genes are returned?
4.5 years ago Kevin Blighe ★ 4.0k
3
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1
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5.0k
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Answer: A: DESeq2 Multiple Conditions: Do I need a "reference"?
4.5 years ago Kevin Blighe ★ 4.0k
2
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1
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989
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Answer: A: Drug response pre- and post-treatment between timepoints across conditions
4.5 years ago Kevin Blighe ★ 4.0k
889 results • Page 15 of 18
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