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Answer: Answer: using tximport with STAR transcript-quantification output
5 months ago rodrigo.duarte88 ▴ 40
3
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3
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3.9k
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Using PEER to identify hidden confounders in RNA-seq data (not working)
PEER RNA-seq differential expression hidden confounders
updated 2.6 years ago by ▴ 30 • written 5.8 years ago by ▴ 40
0
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1
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1.6k
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Comment: Comment: Concatenating expression counts from different RNA-seq quantification tools
3.4 years ago rodrigo.duarte88 ▴ 40
4
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3
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1.6k
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Concatenating expression counts from different RNA-seq quantification tools
tximport HERVs edgeR DESeq2
updated 3.4 years ago by 42k • written 3.4 years ago by ▴ 40
3
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3
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2.0k
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How to run the annotation tool for GARFIELD v2: garfield_annotate_uk10k.sh
garfield awk unix shell embl-ebi
updated 3.6 years ago by • 0 • written 5.6 years ago by ▴ 40
0
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5.9k
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Comment: C: WGCNA automatic vs manual network creation
5.0 years ago rodrigo.duarte88 ▴ 40
0
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0
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71k
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Comment: C: [DESEQ2] How to access the normalized data of a DESeqDataSet
5.1 years ago rodrigo.duarte88 ▴ 40
1
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12
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5.8k
views
WGCNA: correlations module-traits, and module membership-gene significance
WGCNA co-expression analysis gene significance module membership module-trait relationship
updated 2.4 years ago by ▴ 10 • written 5.1 years ago by ▴ 40
0
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0
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6.6k
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Comment: C: ComBat with multiple batches
5.2 years ago rodrigo.duarte88 ▴ 40
0
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1
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6.6k
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Comment: C: ComBat with multiple batches
5.2 years ago rodrigo.duarte88 ▴ 40
0
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1
reply
5.9k
views
Comment: C: WGCNA automatic vs manual network creation
5.2 years ago rodrigo.duarte88 ▴ 40
2
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1
reply
2.0k
views
Answer: A: How to run the annotation tool for GARFIELD v2: garfield_annotate_uk10k.sh
5.6 years ago • updated 5.2 years ago rodrigo.duarte88 ▴ 40
0
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1
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71k
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Comment: C: [DESEQ2] How to access the normalized data of a DESeqDataSet
5.2 years ago rodrigo.duarte88 ▴ 40
1
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0
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11k
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Comment: C: [sva] Error in density.default(x, adjust = adj) : 'x' contains missing values
5.8 years ago rodrigo.duarte88 ▴ 40
0
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0
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3.9k
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Comment: C: Using PEER to identify hidden confounders in RNA-seq data (not working)
5.8 years ago rodrigo.duarte88 ▴ 40
0
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1
reply
1.2k
views
Comment: C: How to calculate overlap between transposable elements differentially expressed
5.8 years ago rodrigo.duarte88 ▴ 40
2
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3
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1.2k
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How to calculate overlap between transposable elements differentially expressed in one experiment, with those expressed in another set of samples?
gene expression enrichment RNA-seq DESeq2
updated 5.8 years ago by 42k • written 5.8 years ago by ▴ 40
0
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0
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1.8k
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Comment: C: Handling missing data, DESeq2
5.8 years ago rodrigo.duarte88 ▴ 40
0
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0
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3.4k
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Comment: C: Subsetting a tximport object
5.8 years ago rodrigo.duarte88 ▴ 40
1
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1
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3.4k
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Comment: C: Subsetting a tximport object
5.8 years ago rodrigo.duarte88 ▴ 40
0
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0
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902
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Comment: C: DESeq2 - assessing expression of low count genes
5.9 years ago rodrigo.duarte88 ▴ 40
1
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2
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902
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DESeq2 - assessing expression of low count genes
deseq2 HERVs low counts prefiltering dispersion estimates
updated 5.9 years ago by 42k • written 6.0 years ago by ▴ 40
0
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1
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54k
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Comment: C: deseq2 filter the low counts
6.0 years ago rodrigo.duarte88 ▴ 40
23 results • Page 1 of 1
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