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3
votes
3
replies
1.1k
views
clarification of time-series analysis
deseq2 baseline LRT
updated 6.2 years ago by 43k • written 6.2 years ago by ★ 1.5k
0
votes
1
reply
3.6k
views
Comment: C: Time-series analysis with DESeq2
6.2 years ago Assa Yeroslaviz ★ 1.5k
2
votes
10
replies
3.6k
views
Time-series analysis with DESeq2
deseq2 time-series design matrix edger
updated 6.2 years ago by 43k • written 6.2 years ago by ★ 1.5k
0
votes
1
reply
954
views
differentail expression analysis with interaction terms
edger deseq2 interaction design matrix
updated 6.2 years ago by 68k • written 6.2 years ago by ★ 1.5k
0
votes
1
reply
2.0k
views
Comment: C: shRNA-Seq analysis using edgeR
6.4 years ago Assa Yeroslaviz ★ 1.5k
0
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1
reply
2.0k
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Comment: C: shRNA-Seq analysis using edgeR
6.4 years ago Assa Yeroslaviz ★ 1.5k
0
votes
1
reply
2.0k
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Comment: C: shRNA-Seq analysis using edgeR
6.4 years ago Assa Yeroslaviz ★ 1.5k
0
votes
1
reply
2.0k
views
Comment: C: shRNA-Seq analysis using edgeR
6.4 years ago Assa Yeroslaviz ★ 1.5k
1
vote
9
replies
2.0k
views
shRNA-Seq analysis using edgeR
shrnaseq edger experimental design model.matrix
updated 6.4 years ago by ★ 28k • written 6.4 years ago by ★ 1.5k
7
votes
5
replies
4.7k
views
summarize scores of GRanges into bins
genomicranges grangeslist bin findoverlaps
updated 6.5 years ago by • 0 • written 7.6 years ago by ★ 1.5k
0
votes
1
reply
1.5k
views
Comment: C: differential expression analysis of cell subtypes mixture
7.1 years ago Assa Yeroslaviz ★ 1.5k
0
votes
0
replies
1.5k
views
Comment: C: differential expression analysis of cell subtypes mixture
7.1 years ago Assa Yeroslaviz ★ 1.5k
0
votes
0
replies
1.7k
views
Comment: C: Unmix() function in DeSeq capabilities
7.1 years ago Assa Yeroslaviz ★ 1.5k
0
votes
5
replies
1.5k
views
differential expression analysis of cell subtypes mixture
deseq2 edgeR design matrix multifactorial design
updated 7.1 years ago by ★ 28k • written 7.1 years ago by ★ 1.5k
0
votes
0
replies
993
views
using the edgeR for sgRNA workflow with my own data
edger sgrna processamplicons
7.1 years ago Assa Yeroslaviz ★ 1.5k
0
votes
1
reply
3.4k
views
Comment: C: duplicated row names when creating DESeqDataSetFromMatrix
7.1 years ago Assa Yeroslaviz ★ 1.5k
1
vote
3
replies
3.4k
views
duplicated row names when creating DESeqDataSetFromMatrix
deseq2 DESeqDataSetFromMatrix duplicate
updated 7.1 years ago by 68k • written 7.1 years ago by ★ 1.5k
0
votes
0
replies
6.8k
views
Comment: C: How do I extract the complete MsaAAMultipleAlignment object to a file
7.3 years ago Assa Yeroslaviz ★ 1.5k
2
votes
11
replies
6.8k
views
How do I extract the complete MsaAAMultipleAlignment object to a file
msaprettyprint() msa multiplealignment export
updated 7.3 years ago by ▴ 300 • written 7.3 years ago by ★ 1.5k
0
votes
0
replies
6.8k
views
Comment: C: How do I extract the complete MsaAAMultipleAlignment object to a file
7.3 years ago Assa Yeroslaviz ★ 1.5k
0
votes
1
reply
6.8k
views
Comment: C: How do I extract the complete MsaAAMultipleAlignment object to a file
7.3 years ago Assa Yeroslaviz ★ 1.5k
0
votes
0
replies
6.8k
views
Comment: C: How do I extract the complete MsaAAMultipleAlignment object to a file
7.3 years ago Assa Yeroslaviz ★ 1.5k
0
votes
1
reply
6.8k
views
Comment: C: How do I extract the complete MsaAAMultipleAlignment object to a file
7.3 years ago Assa Yeroslaviz ★ 1.5k
0
votes
1
reply
6.8k
views
Comment: C: How do I extract the complete MsaAAMultipleAlignment object to a file
7.3 years ago Assa Yeroslaviz ★ 1.5k
0
votes
2
replies
1.8k
views
stimulation effects between wild-type and knockout cells using deseq
multiple factor design interactions design matrix deseq2
updated 7.4 years ago by 43k • written 9.4 years ago by ★ 1.5k
0
votes
2
replies
2.6k
views
Comment: C: complex design for chip-seq analysis
7.5 years ago Assa Yeroslaviz ★ 1.5k
0
votes
1
reply
2.6k
views
Comment: C: complex design for chip-seq analysis
7.5 years ago Assa Yeroslaviz ★ 1.5k
0
votes
0
replies
1.1k
views
resize functions causes an error - "could not find function "unsafe.update"
genomicranges iranges resize
7.5 years ago Assa Yeroslaviz ★ 1.5k
3
votes
7
replies
2.6k
views
complex design for chip-seq analysis
chipseq csaw limma design matrix multiple factor design
updated 7.5 years ago by ★ 28k • written 7.5 years ago by ★ 1.5k
0
votes
0
replies
3.4k
views
pheatmap - Error in do_one(nmeth) : NA/NaN/Inf in foreign function call (arg 1)
pheatmap kmeans
7.5 years ago Assa Yeroslaviz ★ 1.5k
0
votes
1
reply
7.4k
views
Comment: C: deseq2 correcting for batch effects
updated 7.5 years ago by 43k • written 7.5 years ago by ★ 1.5k
6
votes
3
replies
7.4k
views
deseq2 correcting for batch effects
deseq2 batch effect removebatcheffect() design matrix
updated 7.5 years ago by 43k • written 7.5 years ago by ★ 1.5k
0
votes
1
reply
928
views
DESeq2 for ChIP on chip microarrays
deseq2 microarray nimblegene ratio limma
updated 7.5 years ago by 43k • written 7.5 years ago by ★ 1.5k
0
votes
1
reply
1.5k
views
Comment: C: read.maimages
7.5 years ago Assa Yeroslaviz ★ 1.5k
2
votes
3
replies
1.5k
views
read.maimages
Annotation CGH limma Annotation CGH limma
updated 7.5 years ago by 52k • written 12.7 years ago by ★ 1.5k
1
vote
1
reply
4.7k
views
Comment: C: saving a plot as png and also showing inside Rstudio
7.5 years ago Assa Yeroslaviz ★ 1.5k
1
vote
0
replies
1.5k
views
Comment: C: Error in tximport, unused argument (reader = read_tsv)
7.6 years ago Assa Yeroslaviz ★ 1.5k
0
votes
1
reply
3.0k
views
Answer: A: RangedSummarizedExperiment in Deseq2 and DESeqDataSetFromMatrix
7.6 years ago Assa Yeroslaviz ★ 1.5k
0
votes
1
reply
3.0k
views
Comment: C: RangedSummarizedExperiment in Deseq2 and DESeqDataSetFromMatrix
7.6 years ago Assa Yeroslaviz ★ 1.5k
0
votes
0
replies
7.0k
views
Comment: C: converting a GRangesList object with different lengths into a data frame
7.6 years ago Assa Yeroslaviz ★ 1.5k
0
votes
1
reply
7.0k
views
Comment: C: converting a GRangesList object with different lengths into a data frame
7.6 years ago Assa Yeroslaviz ★ 1.5k
0
votes
0
replies
7.0k
views
Comment: C: converting a GRangesList object with different lengths into a data frame
7.6 years ago Assa Yeroslaviz ★ 1.5k
6
votes
6
replies
7.0k
views
converting a GRangesList object with different lengths into a data frame
genomicranges grangeslist dataframe irangeslist lists
updated 7.6 years ago by ★ 11k • written 7.6 years ago by ★ 1.5k
0
votes
0
replies
4.7k
views
Comment: C: summarize scores of GRanges into bins
7.6 years ago Assa Yeroslaviz ★ 1.5k
0
votes
0
replies
2.4k
views
Comment: C: subsetByOverlaps with Multimapping
7.6 years ago Assa Yeroslaviz ★ 1.5k
2
votes
3
replies
2.4k
views
subsetByOverlaps with Multimapping
genomicranges subsetbyoverlaps granges findoverlaps
7.6 years ago Assa Yeroslaviz ★ 1.5k
0
votes
0
replies
2.4k
views
Comment: C: subsetByOverlaps with Multimapping
7.6 years ago Assa Yeroslaviz ★ 1.5k
0
votes
1
reply
4.8k
views
Comment: C: subsetting GRanges object based on gene IDs
7.6 years ago Assa Yeroslaviz ★ 1.5k
0
votes
0
replies
3.8k
views
Comment: C: (Big)wig file of complete chromosome
7.6 years ago Assa Yeroslaviz ★ 1.5k
4
votes
3
replies
4.8k
views
subsetting GRanges object based on gene IDs
genomicranges genomicfeatures granges subsetting
7.6 years ago Assa Yeroslaviz ★ 1.5k
329 results • Page 2 of 7
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