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Possible ways to select differential expressed genes using DeSeq2 or edgeR
R deseq2 edger differential gene expression fold change
updated 2.6 years ago by ★ 4.6k • written 6.5 years ago by ▴ 60
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2
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How to create design matrix for differential analysis within the same cell-line samples?
edger r differentialanalysis rnaseq designmatrix
updated 5.6 years ago by ★ 28k • written 5.6 years ago by ▴ 60
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Comment: C: How to create design matrix for differential analysis within the same cell-line
5.6 years ago Beginner ▴ 60
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Comment: C: Calculating FPKM from raw counts data using fpkm() in deseq2
6.2 years ago Beginner ▴ 60
2
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5
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Calculating FPKM from raw counts data using fpkm() in deseq2
deseq2 r fpkm() geneexpression
updated 6.2 years ago by 43k • written 6.2 years ago by ▴ 60
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0
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Comment: C: Voom transformation from counts and normalization to negative values
6.2 years ago Beginner ▴ 60
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1
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7.7k
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Comment: C: Voom transformation from counts and normalization to negative values
6.2 years ago Beginner ▴ 60
0
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1
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7.7k
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Comment: C: Voom transformation from counts and normalization to negative values
6.2 years ago Beginner ▴ 60
0
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1
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7.7k
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Comment: C: Voom transformation from counts and normalization to negative values
6.2 years ago Beginner ▴ 60
8
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8
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7.7k
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Voom transformation from counts and normalization to negative values
rnaseq voom limma tcga statistics
updated 6.2 years ago by ★ 7.9k • written 6.2 years ago by ▴ 60
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1
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2.6k
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Comment: C: DNA methylation analysis without raw data IDAT files
6.3 years ago Beginner ▴ 60
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0
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Comment: C: DNA methylation analysis without raw data IDAT files
6.3 years ago Beginner ▴ 60
0
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5
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2.6k
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DNA methylation analysis without raw data IDAT files
r illimina 450k methylation minfi champ tcga
updated 6.3 years ago by ▴ 290 • written 6.3 years ago by ▴ 60
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0
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5.8k
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Comment: C: Possible ways to select differential expressed genes using DeSeq2 or edgeR
6.5 years ago Beginner ▴ 60
0
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1
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5.8k
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Comment: C: Possible ways to select differential expressed genes using DeSeq2 or edgeR
6.5 years ago Beginner ▴ 60
0
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1
reply
5.8k
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Comment: C: Possible ways to select differential expressed genes using DeSeq2 or edgeR
6.5 years ago Beginner ▴ 60
0
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1
reply
5.8k
views
Comment: C: Possible ways to select differential expressed genes using DeSeq2 or edgeR
6.5 years ago Beginner ▴ 60
0
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1
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5.8k
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Comment: C: Possible ways to select differential expressed genes using DeSeq2 or edgeR
6.5 years ago Beginner ▴ 60
0
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2
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5.8k
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Comment: C: Possible ways to select differential expressed genes using DeSeq2 or edgeR
6.5 years ago Beginner ▴ 60
0
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1
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1.3k
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Comment: C: Differential analysis based on selection of random samples
6.5 years ago Beginner ▴ 60
0
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1
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1.3k
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Comment: C: Differential analysis based on selection of random samples
6.5 years ago Beginner ▴ 60
1
vote
5
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1.3k
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Differential analysis based on selection of random samples
r differential gene expression deseq2 bioconductor rnaseq
updated 6.5 years ago by 43k • written 6.5 years ago by ▴ 60
0
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2
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5.5k
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Comment: C: Differentially expressed genes selection with FC and FDR cutoff
updated 6.5 years ago by 52k • written 6.5 years ago by ▴ 60
7
votes
15
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5.5k
views
Differentially expressed genes selection with FC and FDR cutoff
edgeR rnaseq r bioconductor
updated 6.5 years ago by 52k • written 6.5 years ago by ▴ 60
0
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1
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5.5k
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Comment: C: Differentially expressed genes selection with FC and FDR cutoff
6.5 years ago Beginner ▴ 60
0
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1
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5.5k
views
Comment: C: Differentially expressed genes selection with FC and FDR cutoff
6.5 years ago Beginner ▴ 60
0
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1
reply
5.5k
views
Comment: C: Differentially expressed genes selection with FC and FDR cutoff
6.5 years ago Beginner ▴ 60
0
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1
reply
5.5k
views
Comment: C: Differentially expressed genes selection with FC and FDR cutoff
6.5 years ago Beginner ▴ 60
0
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2
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5.5k
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Comment: C: Differentially expressed genes selection with FC and FDR cutoff
6.5 years ago Beginner ▴ 60
0
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0
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6.5k
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Comment: C: scaling data for clustering heat map
6.6 years ago Beginner ▴ 60
7
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6
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6.5k
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scaling data for clustering heat map
edger heatmap clustering differential gene expression rnaseq
updated 6.6 years ago by 52k • written 6.6 years ago by ▴ 60
1
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0
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6.5k
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Comment: C: scaling data for clustering heat map
6.6 years ago Beginner ▴ 60
0
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1
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6.5k
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Comment: C: scaling data for clustering heat map
6.6 years ago Beginner ▴ 60
2
votes
1
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2.4k
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Error in TCGAquery of TCGAbiolinks Package
software error bioconductor tcgabiolinks tcga r
updated 6.6 years ago by ▴ 90 • written 6.6 years ago by ▴ 60
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