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Comment: Comment: how to remove batch effects of RNA seq data based on continuous variables(like s
12 months ago amnahsiddiqa ▴ 10
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Comment: Comment: PCA for QC should include subset of top variable genes or full set of genes in R
12 months ago amnahsiddiqa ▴ 10
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how to remove batch effects of RNA seq data based on continuous variables(like surrogate variables from sva package) using combatseq or limma (remove…
combatseq RNASeqData sva limma
12 months ago amnahsiddiqa ▴ 10
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PCA for QC should include subset of top variable genes or full set of genes in RNAseq data?
BatchQC RNASeqData sva BatchEffect
updated 12 months ago by ★ 4.2k • written 12 months ago by ▴ 10
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How to go for Batch correction in RNA-seq expeiment conducted based on imbalanced Experimental design ?
RNASeqData BatchEffect sva
12 months ago amnahsiddiqa ▴ 10
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DESEQ2 differential expression for subsets of data?
RNASeqData DESeq2
updated 12 months ago by ★ 4.2k • written 12 months ago by ▴ 10
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Comment: C: Determining Mismatch (MM) and perfect match (PM) chip design
6.0 years ago amnahsiddiqa ▴ 10
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Determining Mismatch (MM) and perfect match (PM) chip design
affymetrix microarrays
updated 6.0 years ago by 66k • written 6.0 years ago by ▴ 10
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WGCNA grey module
WGCNA
updated 15 months ago by ▴ 10 • written 6.1 years ago by ▴ 10
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WGCNA , value of nPermutations, module preservation
wgcna
6.1 years ago amnahsiddiqa ▴ 10
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WGCNA module trait relationship
WGCNA wgcna
6.1 years ago amnahsiddiqa ▴ 10
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Comment: C: WGCNA grey module
6.1 years ago amnahsiddiqa ▴ 10
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