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Assess fit of variance prior
limma
updated 6 months ago by 51k • written 6 months ago by ▴ 30
0
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1
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2.3k
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Comment: Comment: Different DESeq2 results (both FC and pvalue) by changing col/row orders in inpu
2.0 years ago Frederik Ziebell ▴ 30
0
votes
0
replies
917
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Comment: Comment: running apeglm on a normal model and multiple coefficients
2.2 years ago Frederik Ziebell ▴ 30
1
vote
2
replies
917
views
running apeglm on a normal model and multiple coefficients
shrinkage apeglm
2.2 years ago Frederik Ziebell ▴ 30
0
votes
1
reply
841
views
Wrong stdev.unscaled from contrasts.fit when lmFit contains a weights matrix
limma
updated 2.9 years ago by 51k • written 2.9 years ago by ▴ 30
0
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1
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789
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Comment: C: fitFDist() shows poor fit if df1=1
3.8 years ago Frederik Ziebell ▴ 30
1
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3
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789
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fitFDist() shows poor fit if df1=1
limma
updated 3.8 years ago by 51k • written 3.8 years ago by ▴ 30
1
vote
1
reply
1.3k
views
Using RUVs with known batches
ruvseq deseq2
updated 4.9 years ago by 42k • written 4.9 years ago by ▴ 30
0
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1
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1.0k
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Comment: C: lmFit very slow if there are missing values
4.9 years ago Frederik Ziebell ▴ 30
0
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3
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1.0k
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lmFit very slow if there are missing values
limma
updated 4.9 years ago by 51k • written 4.9 years ago by ▴ 30
0
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2
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5.8k
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Comment: C: DESeq2: Poor dispersion fit, even when a local or custom fit is used
6.1 years ago Frederik Ziebell ▴ 30
0
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1
reply
5.8k
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Comment: C: DESeq2: Poor dispersion fit, even when a local or custom fit is used
6.1 years ago Frederik Ziebell ▴ 30
0
votes
1
reply
5.8k
views
Comment: C: DESeq2: Poor dispersion fit, even when a local or custom fit is used
6.2 years ago Frederik Ziebell ▴ 30
0
votes
1
reply
5.8k
views
Comment: C: DESeq2: Poor dispersion fit, even when a local or custom fit is used
6.2 years ago Frederik Ziebell ▴ 30
0
votes
1
reply
5.8k
views
Comment: A: DESeq2: Poor dispersion fit, even when a local or custom fit is used
6.2 years ago Frederik Ziebell ▴ 30
0
votes
13
replies
5.8k
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DESeq2: Poor dispersion fit, even when a local or custom fit is used
deseq2 dispersion
6.2 years ago Frederik Ziebell ▴ 30
0
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2
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2.1k
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Comment: A: rlog transformation producing outliers with very high log-transformed counts
6.4 years ago Frederik Ziebell ▴ 30
0
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4
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2.1k
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rlog transformation producing outliers with very high log-transformed counts
deseq2 rlog
6.4 years ago Frederik Ziebell ▴ 30
1
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2
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1.1k
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Combine multiple sashimis stretching over the same intron
gviz sashimi plots
6.5 years ago Frederik Ziebell ▴ 30
0
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0
replies
1.1k
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Answer: A: Combine multiple sashimis stretching over the same intron
6.5 years ago Frederik Ziebell ▴ 30
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