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506
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NAs in some genes in topTable output
limma topTable
updated 24 months ago by 52k • written 24 months ago by ▴ 10
0
votes
1
reply
640
views
Interpretation of comparison results in nested designs
DESeq2
updated 2.6 years ago by 43k • written 2.6 years ago by ▴ 10
0
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1
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1.5k
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Comment: Comment: DE analysis model matrix for paired samples
3.0 years ago thkapell ▴ 10
0
votes
4
replies
1.5k
views
DE analysis model matrix for paired samples
NanoStringNCTools DESeq2
updated 3.0 years ago by 43k • written 3.0 years ago by ▴ 10
0
votes
1
reply
1.2k
views
Extract barcodes from all cells that belong to a scRNA-seq dataset neighborhood
miloR
updated 3.1 years ago by • 0 • written 3.1 years ago by ▴ 10
0
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1
reply
10k
views
Comment: Comment: Can NanoString data be analyzed using DESeq2?
3.1 years ago thkapell ▴ 10
0
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0
replies
12k
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Answer: Answer: Cannot install clusterProfiler
3.1 years ago thkapell ▴ 10
0
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0
replies
10k
views
Comment: Comment: Can NanoString data be analyzed using DESeq2?
3.2 years ago thkapell ▴ 10
0
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1
reply
10k
views
Comment: Comment: Can NanoString data be analyzed using DESeq2?
3.2 years ago thkapell ▴ 10
1
vote
1
reply
2.3k
views
Method and kcdf arguments in gsva package
GSVA
updated 4.7 years ago by ★ 3.4k • written 4.7 years ago by ▴ 10
0
votes
1
reply
792
views
Comparison of cydar to other Bioconductor packages for flow cytometry analysis
cydar
updated 4.8 years ago by ★ 28k • written 4.8 years ago by ▴ 10
0
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1
reply
1.2k
views
Comment: C: How can doubletCell() scores be converted to single/doublet annotation?
4.8 years ago thkapell ▴ 10
0
votes
3
replies
1.2k
views
How can doubletCell() scores be converted to single/doublet annotation?
scran doublet
updated 4.8 years ago by ★ 28k • written 4.8 years ago by ▴ 10
0
votes
1
reply
645
views
Comment: C: Is DESeq2 normalisation method appropriate for datasets with multiple cell types
5.2 years ago thkapell ▴ 10
1
vote
3
replies
645
views
Is DESeq2 normalisation method appropriate for datasets with multiple cell types?
deseq2 normalization
updated 5.2 years ago by 43k • written 5.2 years ago by ▴ 10
0
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0
replies
1.7k
views
Comment: C: Error in sva() function: missing values, NaNs produced
5.2 years ago thkapell ▴ 10
0
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1
reply
1.7k
views
Comment: C: Error in sva() function: missing values, NaNs produced
5.2 years ago thkapell ▴ 10
0
votes
1
reply
1.7k
views
Comment: C: Error in sva() function: missing values, NaNs produced
5.2 years ago thkapell ▴ 10
0
votes
1
reply
1.7k
views
Comment: C: Error in sva() function: missing values, NaNs produced
5.2 years ago thkapell ▴ 10
0
votes
8
replies
1.7k
views
Error in sva() function: missing values, NaNs produced
sva batch-correction
updated 5.2 years ago by 67k • written 5.2 years ago by ▴ 10
0
votes
5
replies
3.4k
views
Cannot install Bioconductor v3.9
scran cellassign bioconductor
updated 5.3 years ago by 25k • written 5.3 years ago by ▴ 10
0
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0
replies
3.4k
views
Comment: C: Cannot install Bioconductor v3.9
5.3 years ago thkapell ▴ 10
0
votes
1
reply
2.2k
views
Installation of r2excel package
github packages
updated 6.0 years ago by 52k • written 6.0 years ago by ▴ 10
0
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1
reply
2.4k
views
Comment: C: DESeq2: removal of duplicated genes during statistical analysis
6.1 years ago thkapell ▴ 10
0
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3
replies
2.4k
views
DESeq2: removal of duplicated genes during statistical analysis
deseq2 gene symbol ensembl
updated 6.2 years ago by 43k • written 6.2 years ago by ▴ 10
0
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0
replies
1.7k
views
Comment: C: GSEA using TFs as the gene set
6.2 years ago thkapell ▴ 10
0
votes
2
replies
1.7k
views
GSEA using TFs as the gene set
GSEA transcription factor binding site enrichment analysis
updated 6.2 years ago by ▴ 50 • written 6.2 years ago by ▴ 10
0
votes
1
reply
6.2k
views
Comment: C: How are the shrunk result data used in DESeq2?
6.8 years ago thkapell ▴ 10
0
votes
3
replies
6.2k
views
How are the shrunk result data used in DESeq2?
deseq2 lfcshrink
updated 6.8 years ago by 43k • written 6.8 years ago by ▴ 10
0
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0
replies
1.5k
views
Comment: C: How to get DE relative to a fold-change threshold in single factor experiments
6.9 years ago thkapell ▴ 10
0
votes
1
reply
1.5k
views
Comment: C: How to get DE relative to a fold-change threshold in single factor experiments
6.9 years ago thkapell ▴ 10
0
votes
1
reply
1.5k
views
Comment: C: How to get DE relative to a fold-change threshold in single factor experiments
6.9 years ago thkapell ▴ 10
0
votes
1
reply
1.5k
views
Comment: C: How to get DE relative to a fold-change threshold in single factor experiments
6.9 years ago thkapell ▴ 10
0
votes
1
reply
1.5k
views
Comment: C: How to get DE relative to a fold-change threshold in single factor experiments
6.9 years ago thkapell ▴ 10
2
votes
10
replies
1.5k
views
How to get DE relative to a fold-change threshold in single factor experiments
edgeR deanalysis test fisher exact
updated 6.9 years ago by ★ 28k • written 6.9 years ago by ▴ 10
0
votes
0
replies
6.2k
views
Comment: C: how to control age and gender effect in expression data using DESeq2
6.9 years ago thkapell ▴ 10
3
votes
4
replies
1.5k
views
Normalisation in edgeR
edgeR normalization calcnormfactors
updated 6.9 years ago by 52k • written 6.9 years ago by ▴ 10
0
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0
replies
3.0k
views
Comment: C: How to plot MD plot in limma
6.9 years ago thkapell ▴ 10
2
votes
4
replies
3.0k
views
How to plot MD plot in limma
limma plotMD
updated 6.9 years ago by 52k • written 6.9 years ago by ▴ 10
0
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1
reply
3.0k
views
Comment: A: How to plot MD plot in limma
updated 6.9 years ago by 52k • written 6.9 years ago by ▴ 10
0
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0
replies
1.5k
views
Comment: A: Normalisation in edgeR
6.9 years ago thkapell ▴ 10
0
votes
1
reply
683
views
Comment: C: Multiple comparisons in DESeq2
6.9 years ago thkapell ▴ 10
1
vote
3
replies
683
views
Multiple comparisons in DESeq2
deseq2
updated 7.1 years ago by 43k • written 7.1 years ago by ▴ 10
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