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Biostrings dependency cause new warnings on CRAN packages (base function rgb not found)
Biostrings
updated 5.2 years ago by 25k • written 5.2 years ago by ▴ 30
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Comment: C: GenomicRanges requires S4Vectors 0.23.19 when 0.22.1 installs from BiocManager
5.4 years ago james.dalgleish ▴ 30
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Answer: A: GenomicRanges requires S4Vectors 0.23.19 when 0.22.1 installs from BiocManager
5.4 years ago james.dalgleish ▴ 30
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3.8k
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GenomicRanges requires S4Vectors 0.23.19 when 0.22.1 installs from BiocManager
S4Vectors GenomicRanges BiocManager
5.4 years ago james.dalgleish ▴ 30
0
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3.8k
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Comment: C: GenomicRanges requires S4Vectors 0.23.19 when 0.22.1 installs from BiocManager
5.4 years ago james.dalgleish ▴ 30
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Comment: C: GenomicRanges requires S4Vectors 0.23.19 when 0.22.1 installs from BiocManager
5.4 years ago james.dalgleish ▴ 30
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Comment: C: "Packages required but not available." rtracklayer in OSX is not available to CR
5.6 years ago james.dalgleish ▴ 30
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1.8k
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"Packages required but not available." rtracklayer in OSX is not available to CRAN, resulting in errors for downstream dependencies.
GenomicRanges rtracklayer VariantAnnotation S4Vectors SummarizedExperiment
updated 5.6 years ago by ★ 13k • written 5.6 years ago by ▴ 30
1
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4
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969
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Old jmosaics working package
jmosaics
6.9 years ago james.dalgleish ▴ 30
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0
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969
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Comment: A: Old jmosaics working package
6.9 years ago james.dalgleish ▴ 30
2
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4
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1.6k
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Using massifquant for peak detection of generic matrix data?
xcms kalman centwave yamss
7.0 years ago • updated 6.9 years ago james.dalgleish ▴ 30
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Answer: A: Using massifquant for peak detection of generic matrix data?
6.9 years ago james.dalgleish ▴ 30
0
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1.6k
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Comment: C: Using massifquant for peak detection of generic matrix data?
7.0 years ago james.dalgleish ▴ 30
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2
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1.6k
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Comment: C: two factor chip with diffbind and edgeR (or DESeq2).
7.1 years ago james.dalgleish ▴ 30
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1
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1.6k
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Comment: C: two factor chip with diffbind and edgeR (or DESeq2).
7.1 years ago james.dalgleish ▴ 30
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6
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1.6k
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two factor chip with diffbind and edgeR (or DESeq2).
diffbind edger
updated 7.1 years ago by ★ 28k • written 7.1 years ago by ▴ 30
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1
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2.0k
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Comment: C: Genomic Features UCSC refseq genes "Download the knownGene table ... Error: Bad
7.1 years ago james.dalgleish ▴ 30
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1
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2.0k
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Comment: C: Genomic Features UCSC refseq genes "Download the knownGene table ... Error: Bad
7.1 years ago james.dalgleish ▴ 30
1
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4
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2.0k
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Genomic Features UCSC refseq genes "Download the knownGene table ... Error: Bad Request"
genomicfeatures
updated 7.1 years ago by ★ 11k • written 7.1 years ago by ▴ 30
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3.2k
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seqlevels(param) not in BAM header
jmosaics
7.1 years ago james.dalgleish ▴ 30
2
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4
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2.5k
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possible Rtracklayer issue: TxDb errors in GenomicFeatures package-- cannot load TxDb with standard params from UCSC (issue began last night)
genomicfeatures txdb maketxdbfromucsc maketxdbfrombiomart rtracklayer
updated 7.2 years ago by ★ 11k • written 7.2 years ago by ▴ 30
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Answer: A: TxDb errors in GenomicFeatures package-- cannot load TxDb with standard params f
7.2 years ago james.dalgleish ▴ 30
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