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Comment:
C: How can I overcome the error of "No residual degrees of freedom in linear model
5.2 years ago
swbarnes2
★ 1.4k
0
votes
1
reply
2.1k
views
Comment:
C: DESeq2 compare all_vs_all levels error
5.3 years ago
swbarnes2
★ 1.4k
0
votes
1
reply
2.1k
views
Answer:
A: DESeq2 compare all_vs_all levels error
5.3 years ago
swbarnes2
★ 1.4k
0
votes
0
replies
455
views
Comment:
C: how to change PCA plot in ropls
5.3 years ago
swbarnes2
★ 1.4k
0
votes
1
reply
1.6k
views
Answer:
A: DESeq2 Interaction Term Interpretation for Microbiome Data
5.3 years ago
swbarnes2
★ 1.4k
0
votes
0
replies
992
views
Answer:
A: DESeq2 log fold change
5.3 years ago
swbarnes2
★ 1.4k
0
votes
0
replies
1.4k
views
Comment:
C: How to add row data to DESeqDataSetFromMatrix
5.3 years ago
swbarnes2
★ 1.4k
2
votes
1
reply
528
views
Does response on subset of data in DESeq
deseq2
updated 5.3 years ago by
Michael Love
42k • written 5.3 years ago by
swbarnes2
★ 1.4k
0
votes
0
replies
3.7k
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Answer:
A: Intercept result in DESeq2 two factor model
5.3 years ago
swbarnes2
★ 1.4k
2
votes
1
reply
3.7k
views
Answer:
A: DESeq2 logfoldchange and interaction in model
5.3 years ago
swbarnes2
★ 1.4k
2
votes
1
reply
2.5k
views
Answer:
C: Principal components in DESeq2
5.3 years ago
swbarnes2
★ 1.4k
0
votes
0
replies
1.4k
views
Answer:
A: Creating an Expression Set from a csv file or EXCEL file
5.3 years ago
swbarnes2
★ 1.4k
0
votes
0
replies
806
views
Comment:
C: How to subset data
5.3 years ago
swbarnes2
★ 1.4k
0
votes
1
reply
806
views
Answer:
A: How to subset data
5.4 years ago
swbarnes2
★ 1.4k
0
votes
1
reply
936
views
Comment:
C: DESeQ2 design multiple conditions
5.4 years ago
swbarnes2
★ 1.4k
0
votes
1
reply
936
views
Answer:
A: DESeQ2 design multiple conditions
5.4 years ago
swbarnes2
★ 1.4k
0
votes
0
replies
2.2k
views
Comment:
C: How to get the regression slope coefficient from DESeq2 analysis of continuous d
5.4 years ago
swbarnes2
★ 1.4k
0
votes
1
reply
4.3k
views
Comment:
C: FeatureCounts counts wrongly when quantifying mixed paired and unpaired reads
5.4 years ago
swbarnes2
★ 1.4k
0
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0
replies
2.8k
views
Comment:
C: Problem with construction of DESeqDataSet object
5.4 years ago
swbarnes2
★ 1.4k
2
votes
0
replies
3.0k
views
Answer:
A: biomaRt returns all NAs for hgnc_symbol
5.4 years ago
swbarnes2
★ 1.4k
2
votes
0
replies
3.7k
views
Comment:
C: Log2(RPKM) counts in Bioconductor
5.5 years ago
swbarnes2
★ 1.4k
0
votes
1
reply
3.0k
views
Comment:
C: Compare and filter two BAM files, one record at a time
5.5 years ago
swbarnes2
★ 1.4k
3
votes
2
replies
1.4k
views
Answer:
A: Appropriate experimental design for differential expresion
5.5 years ago
swbarnes2
★ 1.4k
1
vote
0
replies
1.4k
views
Comment:
C: Appropriate experimental design for differential expresion
5.5 years ago
swbarnes2
★ 1.4k
0
votes
0
replies
1.1k
views
Comment:
C: model design in rna seq - deseq2
5.5 years ago
swbarnes2
★ 1.4k
0
votes
0
replies
610
views
Answer:
A: Find the expected counts in DESeq2 output
5.5 years ago
swbarnes2
★ 1.4k
1
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0
replies
5.7k
views
Answer:
A: What are the methods to get count data per cell from single cell fastq given onl
5.6 years ago
swbarnes2
★ 1.4k
1
vote
0
replies
1.5k
views
Answer:
A: Simple csv import error
5.6 years ago
swbarnes2
★ 1.4k
0
votes
0
replies
1.0k
views
Answer:
A: Appropriate design formula for DESeq2 from principles
5.6 years ago
swbarnes2
★ 1.4k
1
vote
0
replies
8.4k
views
Answer:
A: How to find Top 10 expressed genes in DESeq2
5.6 years ago
swbarnes2
★ 1.4k
1
vote
0
replies
824
views
Answer:
A: Remove any rows with 0 count in S4
5.7 years ago
swbarnes2
★ 1.4k
0
votes
0
replies
1.3k
views
Comment:
A: Differential expression analysis error
updated 5.7 years ago by
Gordon Smyth
51k • written 5.7 years ago by
swbarnes2
★ 1.4k
0
votes
1
reply
603
views
DESeq2 on mixed species samples
deseq2
updated 5.8 years ago by
James W. MacDonald
67k • written 5.8 years ago by
swbarnes2
★ 1.4k
0
votes
0
replies
45k
views
Answer:
A: What is colData? How do I make one?
5.9 years ago
swbarnes2
★ 1.4k
0
votes
0
replies
849
views
Comment:
C: importing Tximport to DESeq2 for a time series experiment
5.9 years ago
swbarnes2
★ 1.4k
0
votes
1
reply
913
views
Answer:
A: DESeq2 Multi-Sample Test
5.9 years ago
swbarnes2
★ 1.4k
0
votes
1
reply
2.2k
views
Comment:
C: Differentiating between batch and treatment effects in edgeR, DESeq2
5.9 years ago
swbarnes2
★ 1.4k
0
votes
2
replies
1.1k
views
Answer:
A: DESeq2 memory allocation question
5.9 years ago
swbarnes2
★ 1.4k
0
votes
1
reply
1.3k
views
Comment:
C: Actually meaning of log2FoldChange, p-value & padj in DESeq2 results
6.0 years ago
swbarnes2
★ 1.4k
0
votes
1
reply
1.3k
views
Comment:
C: Actually meaning of log2FoldChange, p-value & padj in DESeq2 results
6.0 years ago
swbarnes2
★ 1.4k
0
votes
1
reply
1.3k
views
Answer:
A: deseq2 analysis multiple factor and 4 different time points
6.0 years ago
swbarnes2
★ 1.4k
0
votes
1
reply
688
views
Multiple tissue types in one DESeq2 object
deseq2
updated 6.0 years ago by
Michael Love
42k • written 6.0 years ago by
swbarnes2
★ 1.4k
2
votes
2
replies
4.2k
views
Answer:
A: Why does biomart work on humans and not mouse genes for HGNC symbol conversion?
6.1 years ago
swbarnes2
★ 1.4k
0
votes
0
replies
698
views
Comment:
C: Strange results from Deseq2
6.1 years ago
swbarnes2
★ 1.4k
0
votes
1
reply
698
views
Comment:
C: Strange results from Deseq2
6.1 years ago
swbarnes2
★ 1.4k
0
votes
4
replies
698
views
Strange results from Deseq2
deseq2
6.1 years ago
swbarnes2
★ 1.4k
0
votes
1
reply
2.4k
views
Comment:
C: Individuals nested within blocks in DESeq2
6.1 years ago
swbarnes2
★ 1.4k
0
votes
0
replies
1.0k
views
Answer:
A: 3x2 comparisons in DEseq - time (3 time points) and two treatments
6.2 years ago
swbarnes2
★ 1.4k
1
vote
0
replies
7.5k
views
Answer:
A: Understanding Contrasts when analyzing DESeq2 results
6.2 years ago
swbarnes2
★ 1.4k
1
vote
0
replies
977
views
Answer:
A: A DESeq2 problem in dealing with case-control study
6.3 years ago
swbarnes2
★ 1.4k
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