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Answer: A: Comparing two different sequencing method by DEseq2
5.6 years ago swbarnes2 ★ 1.4k
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2
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Comment: C: Difference of difference, paired design
5.6 years ago swbarnes2 ★ 1.4k
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2.2k
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Answer: A: Difference of difference, paired design
5.6 years ago swbarnes2 ★ 1.4k
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586
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Answer: A: Creating the correct design
5.6 years ago swbarnes2 ★ 1.4k
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2.0k
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Comment: C: deseq2 pre filter rna seq
5.6 years ago swbarnes2 ★ 1.4k
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Comment: C: Difference between gene-level test and transcript-level test with RATs (Relative
5.6 years ago swbarnes2 ★ 1.4k
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870
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Comment: C: More Info on results names
5.6 years ago swbarnes2 ★ 1.4k
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843
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Answer: A: Batch correction for two conditions two batches
5.6 years ago swbarnes2 ★ 1.4k
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Answer: A: Deseq issues - pipeline all of a sudden stopped working
5.6 years ago swbarnes2 ★ 1.4k
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Comment: C: How can I overcome the error of "No residual degrees of freedom in linear model
5.6 years ago swbarnes2 ★ 1.4k
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Comment: C: DESeq2 compare all_vs_all levels error
5.6 years ago swbarnes2 ★ 1.4k
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Answer: A: DESeq2 compare all_vs_all levels error
5.6 years ago swbarnes2 ★ 1.4k
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504
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Comment: C: how to change PCA plot in ropls
5.7 years ago swbarnes2 ★ 1.4k
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1
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1.8k
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Answer: A: DESeq2 Interaction Term Interpretation for Microbiome Data
5.7 years ago swbarnes2 ★ 1.4k
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Answer: A: DESeq2 log fold change
5.7 years ago swbarnes2 ★ 1.4k
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1.6k
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Comment: C: How to add row data to DESeqDataSetFromMatrix
5.7 years ago swbarnes2 ★ 1.4k
2
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1
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577
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Does response on subset of data in DESeq
deseq2
updated 5.7 years ago by 43k • written 5.7 years ago by ★ 1.4k
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Answer: A: Intercept result in DESeq2 two factor model
5.7 years ago swbarnes2 ★ 1.4k
2
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Answer: A: DESeq2 logfoldchange and interaction in model
5.7 years ago swbarnes2 ★ 1.4k
2
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2.8k
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Answer: C: Principal components in DESeq2
5.7 years ago swbarnes2 ★ 1.4k
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1.6k
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Answer: A: Creating an Expression Set from a csv file or EXCEL file
5.7 years ago swbarnes2 ★ 1.4k
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955
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Comment: C: How to subset data
5.7 years ago swbarnes2 ★ 1.4k
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955
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Answer: A: How to subset data
5.7 years ago swbarnes2 ★ 1.4k
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1.1k
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Comment: C: DESeQ2 design multiple conditions
5.8 years ago swbarnes2 ★ 1.4k
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1.1k
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Answer: A: DESeQ2 design multiple conditions
5.8 years ago swbarnes2 ★ 1.4k
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2.4k
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Comment: C: How to get the regression slope coefficient from DESeq2 analysis of continuous d
5.8 years ago swbarnes2 ★ 1.4k
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1
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4.6k
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Comment: C: FeatureCounts counts wrongly when quantifying mixed paired and unpaired reads
5.8 years ago swbarnes2 ★ 1.4k
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3.0k
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Comment: C: Problem with construction of DESeqDataSet object
5.8 years ago swbarnes2 ★ 1.4k
2
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3.4k
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Answer: A: biomaRt returns all NAs for hgnc_symbol
5.8 years ago swbarnes2 ★ 1.4k
2
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4.0k
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Comment: C: Log2(RPKM) counts in Bioconductor
5.9 years ago swbarnes2 ★ 1.4k
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1
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3.3k
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Comment: C: Compare and filter two BAM files, one record at a time
5.9 years ago swbarnes2 ★ 1.4k
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1.5k
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Answer: A: Appropriate experimental design for differential expresion
5.9 years ago swbarnes2 ★ 1.4k
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1.5k
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Comment: C: Appropriate experimental design for differential expresion
5.9 years ago swbarnes2 ★ 1.4k
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1.2k
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Comment: C: model design in rna seq - deseq2
5.9 years ago swbarnes2 ★ 1.4k
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0
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663
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Answer: A: Find the expected counts in DESeq2 output
5.9 years ago swbarnes2 ★ 1.4k
1
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6.1k
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Answer: A: What are the methods to get count data per cell from single cell fastq given onl
5.9 years ago swbarnes2 ★ 1.4k
1
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0
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1.7k
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Answer: A: Simple csv import error
5.9 years ago swbarnes2 ★ 1.4k
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0
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1.3k
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Answer: A: Appropriate design formula for DESeq2 from principles
6.0 years ago swbarnes2 ★ 1.4k
1
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0
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9.0k
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Answer: A: How to find Top 10 expressed genes in DESeq2
6.0 years ago swbarnes2 ★ 1.4k
1
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0
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883
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Answer: A: Remove any rows with 0 count in S4
6.0 years ago swbarnes2 ★ 1.4k
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0
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1.4k
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Comment: A: Differential expression analysis error
updated 6.0 years ago by 52k • written 6.0 years ago by ★ 1.4k
0
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1
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664
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DESeq2 on mixed species samples
deseq2
updated 6.2 years ago by 68k • written 6.2 years ago by ★ 1.4k
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47k
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Answer: A: What is colData? How do I make one?
6.2 years ago swbarnes2 ★ 1.4k
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936
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Comment: C: importing Tximport to DESeq2 for a time series experiment
6.2 years ago swbarnes2 ★ 1.4k
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1
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980
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Answer: A: DESeq2 Multi-Sample Test
6.3 years ago swbarnes2 ★ 1.4k
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1
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2.4k
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Comment: C: Differentiating between batch and treatment effects in edgeR, DESeq2
6.3 years ago swbarnes2 ★ 1.4k
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2
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1.1k
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Answer: A: DESeq2 memory allocation question
6.3 years ago swbarnes2 ★ 1.4k
0
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1
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1.4k
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Comment: C: Actually meaning of log2FoldChange, p-value & padj in DESeq2 results
6.3 years ago swbarnes2 ★ 1.4k
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1
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1.4k
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Comment: C: Actually meaning of log2FoldChange, p-value & padj in DESeq2 results
6.3 years ago swbarnes2 ★ 1.4k
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1
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1.4k
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Answer: A: deseq2 analysis multiple factor and 4 different time points
6.3 years ago swbarnes2 ★ 1.4k
464 results • Page 9 of 10
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