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Comment: Comment: DESeq2 design and contrasts with 2 drug-treated and one control group
3 days ago swbarnes2 ★ 1.4k
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134
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Comment: Comment: DESeq2 analysis on 2 plant lines infected with virus, with 2 time points (days p
3 days ago swbarnes2 ★ 1.4k
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424
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Answer: Answer: PCA analysis RNA-Seq QC looks strange?
18 days ago swbarnes2 ★ 1.4k
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742
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Answer: Answer: Understanding Contrasts and Interaction in DESeq2 for 2 genotypes, 2 treatments
28 days ago swbarnes2 ★ 1.4k
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423
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Answer: Answer: Differential expression analysis in time course experiments with DESeq2
5 weeks ago swbarnes2 ★ 1.4k
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694
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Answer: Answer: DESeq2: How to Compare the Condition Effects of Two Different Treatments?
6 weeks ago swbarnes2 ★ 1.4k
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1.2k
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Comment: Comment: Deseq2 design formula and analysis with internal controls
6 weeks ago swbarnes2 ★ 1.4k
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1.2k
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Comment: Comment: Deseq2 design formula and analysis with internal controls
8 weeks ago swbarnes2 ★ 1.4k
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1.2k
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Answer: Answer: Deseq2 design formula and analysis with internal controls
8 weeks ago swbarnes2 ★ 1.4k
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857
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Answer: Answer: DGE with a Continuous Variable
10 weeks ago swbarnes2 ★ 1.4k
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273
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Answer: Answer: Can we compare 3 different experimental conditions with DESeq2?
3 months ago swbarnes2 ★ 1.4k
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329
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Answer: Answer: Best way to describe DEseq2 design
3 months ago swbarnes2 ★ 1.4k
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637
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Answer: Answer: Counter-directional LFC shrinkage
4 months ago swbarnes2 ★ 1.4k
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1000
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Comment: Comment: Numerical differences in DESeq2 output depending on different design matrix cons
4 months ago swbarnes2 ★ 1.4k
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882
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Comment: Comment: deseq2 results
4 months ago swbarnes2 ★ 1.4k
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882
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Comment: Comment: deseq2 results
4 months ago swbarnes2 ★ 1.4k
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882
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Comment: Comment: deseq2 results
4 months ago swbarnes2 ★ 1.4k
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590
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Answer: Answer: Once again a "Model matrix not full rank"
4 months ago swbarnes2 ★ 1.4k
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897
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Comment: Comment: DESeq2 output used for PCA plot on R studio
5 months ago swbarnes2 ★ 1.4k
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2
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897
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Comment: Comment: DESeq2 output used for PCA plot on R studio
5 months ago swbarnes2 ★ 1.4k
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1
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520
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Answer: Answer: Opposite sign of LFC in count plots of DEGs (DESeq2)
5 months ago swbarnes2 ★ 1.4k
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897
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Comment: Comment: DESeq2 output used for PCA plot on R studio
5 months ago swbarnes2 ★ 1.4k
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1
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361
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Answer: Answer: Interaction Terms in DESeq2 - Shrinkage
5 months ago swbarnes2 ★ 1.4k
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1
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415
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Answer: Answer: Design Matrix within group comparison more than two groups
5 months ago swbarnes2 ★ 1.4k
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578
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Comment: Comment: DESEQ2 Batch Effect
6 months ago swbarnes2 ★ 1.4k
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578
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Answer: Answer: DESEQ2 Batch Effect
6 months ago swbarnes2 ★ 1.4k
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636
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Answer: Answer: Is DESeq2 normalisation appropriate when counts were obtained for a small number
7 months ago swbarnes2 ★ 1.4k
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0
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655
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Answer: Answer: LOG2FC DESEQ2
7 months ago swbarnes2 ★ 1.4k
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1
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883
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Comment: Comment: Deseq2 Coefficients from resultsNames() not reflecting all coefficient possibili
8 months ago swbarnes2 ★ 1.4k
2
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658
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Answer: Answer: Comparing one group against multiple groups in DESeq2
8 months ago swbarnes2 ★ 1.4k
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1
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883
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Comment: Comment: Deseq2 Coefficients from resultsNames() not reflecting all coefficient possibili
8 months ago swbarnes2 ★ 1.4k
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0
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2.0k
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Answer: Answer: Using STAR's readspergene.tab.out outputs to make gene-level count matrix for DE
9 months ago swbarnes2 ★ 1.4k
0
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1
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883
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Answer: Answer: Deseq2 Coefficients from resultsNames() not reflecting all coefficient possibili
9 months ago swbarnes2 ★ 1.4k
0
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1
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747
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Answer: Answer: 'Subtracting' counts on basis of Negative control media and water samples
10 months ago swbarnes2 ★ 1.4k
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1
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1.4k
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Comment: Comment: DESeq2 Normalization with 4 Groups
11 months ago swbarnes2 ★ 1.4k
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0
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1.4k
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Comment: Comment: Two factor design including interaction effect with DESeq2 in R
11 months ago swbarnes2 ★ 1.4k
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1.4k
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Answer: Answer: Two factor design including interaction effect with DESeq2 in R
11 months ago swbarnes2 ★ 1.4k
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1.2k
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Comment: Comment: DESeq2: Design model includes sex but only one female
11 months ago swbarnes2 ★ 1.4k
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0
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592
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Comment: Comment: Issues with ddseq2 for treatment response factoring in different KO clones
11 months ago swbarnes2 ★ 1.4k
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0
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619
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Answer: Answer: DeSeq2 data comparison and extracting outputs
11 months ago swbarnes2 ★ 1.4k
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1
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689
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Answer: Answer: Deseq2, how to model design for comparing Mutant mouse at age 14 days versus Mu
12 months ago swbarnes2 ★ 1.4k
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0
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960
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Comment: Comment: How to use contrast with multiple treatments?
13 months ago swbarnes2 ★ 1.4k
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0
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800
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Answer: Answer: How to properly compare the group-specific samples using DEseq2
13 months ago swbarnes2 ★ 1.4k
0
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1
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960
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Comment: Comment: How to use contrast with multiple treatments?
13 months ago swbarnes2 ★ 1.4k
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0
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1.3k
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Comment: Comment: Handle zero effective gene length when tximport RSEM results
13 months ago swbarnes2 ★ 1.4k
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1
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2.1k
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Comment: Comment: PCA percent variance DESeq2
13 months ago swbarnes2 ★ 1.4k
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0
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919
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Answer: Answer: DESeq2 batch design
13 months ago swbarnes2 ★ 1.4k
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1
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1.3k
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Answer: Answer: Handle zero effective gene length when tximport RSEM results
13 months ago swbarnes2 ★ 1.4k
1
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1
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2.1k
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Comment: Comment: PCA percent variance DESeq2
13 months ago swbarnes2 ★ 1.4k
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0
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1.6k
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Comment: Comment: Question about RNAseq analysis in EdgeR to identify common and donor specific di
14 months ago swbarnes2 ★ 1.4k
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