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Answer: Answer: p value is 0, padj is 0
20 days ago swbarnes2 ★ 1.4k
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717
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Comment: Comment: DESeq2: Gene is DEG in one experiment but not in the other depite similar baseMe
23 days ago swbarnes2 ★ 1.4k
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611
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Answer: Answer: Handling biological replicates in DESeq2
7 weeks ago swbarnes2 ★ 1.4k
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969
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Answer: Answer: Volcano plot has many values around zero
7 weeks ago swbarnes2 ★ 1.4k
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969
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Comment: Comment: Volcano plot has many values around zero
7 weeks ago swbarnes2 ★ 1.4k
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232
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Answer: Answer: How to adjust the DESeq2 formula when there is no control group for one factor?
11 weeks ago swbarnes2 ★ 1.4k
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558
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Comment: Comment: DESeq2 design and contrasts with 2 drug-treated and one control group
3 months ago swbarnes2 ★ 1.4k
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733
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Comment: Comment: DESeq2 analysis on 2 plant lines infected with virus, with 2 time points (days p
3 months ago swbarnes2 ★ 1.4k
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538
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Answer: Answer: PCA analysis RNA-Seq QC looks strange?
3 months ago swbarnes2 ★ 1.4k
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0
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931
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Answer: Answer: Understanding Contrasts and Interaction in DESeq2 for 2 genotypes, 2 treatments
4 months ago swbarnes2 ★ 1.4k
0
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577
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Answer: Answer: Differential expression analysis in time course experiments with DESeq2
4 months ago swbarnes2 ★ 1.4k
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1.1k
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Answer: Answer: DESeq2: How to Compare the Condition Effects of Two Different Treatments?
4 months ago swbarnes2 ★ 1.4k
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1.5k
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Comment: Comment: Deseq2 design formula and analysis with internal controls
4 months ago swbarnes2 ★ 1.4k
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1.5k
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Comment: Comment: Deseq2 design formula and analysis with internal controls
5 months ago swbarnes2 ★ 1.4k
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1.5k
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Answer: Answer: Deseq2 design formula and analysis with internal controls
5 months ago swbarnes2 ★ 1.4k
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1.1k
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Answer: Answer: DGE with a Continuous Variable
5 months ago swbarnes2 ★ 1.4k
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357
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Answer: Answer: Can we compare 3 different experimental conditions with DESeq2?
6 months ago swbarnes2 ★ 1.4k
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401
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Answer: Answer: Best way to describe DEseq2 design
7 months ago swbarnes2 ★ 1.4k
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0
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753
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Answer: Answer: Counter-directional LFC shrinkage
7 months ago swbarnes2 ★ 1.4k
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1.1k
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Comment: Comment: Numerical differences in DESeq2 output depending on different design matrix cons
7 months ago swbarnes2 ★ 1.4k
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1.2k
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Comment: Comment: deseq2 results
7 months ago swbarnes2 ★ 1.4k
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1.2k
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Comment: Comment: deseq2 results
7 months ago swbarnes2 ★ 1.4k
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1.2k
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Comment: Comment: deseq2 results
7 months ago swbarnes2 ★ 1.4k
0
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0
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744
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Answer: Answer: Once again a "Model matrix not full rank"
8 months ago swbarnes2 ★ 1.4k
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1.4k
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Comment: Comment: DESeq2 output used for PCA plot on R studio
8 months ago swbarnes2 ★ 1.4k
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2
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1.4k
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Comment: Comment: DESeq2 output used for PCA plot on R studio
8 months ago swbarnes2 ★ 1.4k
0
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1
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811
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Answer: Answer: Opposite sign of LFC in count plots of DEGs (DESeq2)
8 months ago swbarnes2 ★ 1.4k
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1
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1.4k
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Comment: Comment: DESeq2 output used for PCA plot on R studio
8 months ago swbarnes2 ★ 1.4k
0
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1
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450
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Answer: Answer: Interaction Terms in DESeq2 - Shrinkage
8 months ago swbarnes2 ★ 1.4k
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1
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512
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Answer: Answer: Design Matrix within group comparison more than two groups
8 months ago swbarnes2 ★ 1.4k
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0
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716
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Comment: Comment: DESEQ2 Batch Effect
10 months ago swbarnes2 ★ 1.4k
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1
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716
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Answer: Answer: DESEQ2 Batch Effect
10 months ago swbarnes2 ★ 1.4k
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0
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746
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Answer: Answer: Is DESeq2 normalisation appropriate when counts were obtained for a small number
10 months ago swbarnes2 ★ 1.4k
0
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0
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760
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Answer: Answer: LOG2FC DESEQ2
11 months ago swbarnes2 ★ 1.4k
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1
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1.1k
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Comment: Comment: Deseq2 Coefficients from resultsNames() not reflecting all coefficient possibili
11 months ago swbarnes2 ★ 1.4k
2
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752
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Answer: Answer: Comparing one group against multiple groups in DESeq2
11 months ago swbarnes2 ★ 1.4k
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1
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1.1k
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Comment: Comment: Deseq2 Coefficients from resultsNames() not reflecting all coefficient possibili
11 months ago swbarnes2 ★ 1.4k
0
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0
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2.4k
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Answer: Answer: Using STAR's readspergene.tab.out outputs to make gene-level count matrix for DE
12 months ago swbarnes2 ★ 1.4k
0
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1
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1.1k
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Answer: Answer: Deseq2 Coefficients from resultsNames() not reflecting all coefficient possibili
12 months ago swbarnes2 ★ 1.4k
0
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1
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913
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Answer: Answer: 'Subtracting' counts on basis of Negative control media and water samples
13 months ago swbarnes2 ★ 1.4k
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1
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1.6k
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Comment: Comment: DESeq2 Normalization with 4 Groups
14 months ago swbarnes2 ★ 1.4k
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0
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1.8k
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Comment: Comment: Two factor design including interaction effect with DESeq2 in R
14 months ago swbarnes2 ★ 1.4k
1
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1
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1.8k
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Answer: Answer: Two factor design including interaction effect with DESeq2 in R
14 months ago swbarnes2 ★ 1.4k
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1.3k
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Comment: Comment: DESeq2: Design model includes sex but only one female
14 months ago swbarnes2 ★ 1.4k
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0
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671
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Comment: Comment: Issues with ddseq2 for treatment response factoring in different KO clones
15 months ago swbarnes2 ★ 1.4k
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0
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711
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Answer: Answer: DeSeq2 data comparison and extracting outputs
15 months ago swbarnes2 ★ 1.4k
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1
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773
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Answer: Answer: Deseq2, how to model design for comparing Mutant mouse at age 14 days versus Mu
15 months ago swbarnes2 ★ 1.4k
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0
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1.1k
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Comment: Comment: How to use contrast with multiple treatments?
16 months ago swbarnes2 ★ 1.4k
0
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0
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923
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Answer: Answer: How to properly compare the group-specific samples using DEseq2
16 months ago swbarnes2 ★ 1.4k
0
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1
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1.1k
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Comment: Comment: How to use contrast with multiple treatments?
16 months ago swbarnes2 ★ 1.4k
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