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2
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Comment: C: DESeq2 model matrix question
4.7 years ago swbarnes2 ★ 1.4k
0
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1
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1.1k
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Answer: A: DESeq2 model matrix question
4.7 years ago swbarnes2 ★ 1.4k
0
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1
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1.2k
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Comment: C: DeSeq2: error in design individuals nested within groups
4.7 years ago swbarnes2 ★ 1.4k
0
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0
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665
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Answer: A: Error in biomaRt
4.8 years ago swbarnes2 ★ 1.4k
0
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0
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3.0k
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Comment: C: DESeq2 swap ensembl gene id rownames with gene symbol column
4.8 years ago swbarnes2 ★ 1.4k
1
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0
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2.2k
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Answer: A: Understanding interactions in DESeq2
4.8 years ago swbarnes2 ★ 1.4k
0
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1
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2.8k
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Comment: C: featureCount error - cannot identify gene_id
4.8 years ago swbarnes2 ★ 1.4k
2
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0
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3.0k
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Answer: A: How to perform DEseq2 on datasets without replicates or merged replicates
4.8 years ago swbarnes2 ★ 1.4k
0
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0
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1.6k
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Answer: A: DESeq2 comparison of treatment within tissue type, ignoring other tissue type
4.9 years ago swbarnes2 ★ 1.4k
0
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0
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765
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Answer: A: DESeq2 analysis. Understanding results() and the design formula.
4.9 years ago swbarnes2 ★ 1.4k
1
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1
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2.1k
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Answer: A: interpreting FC values from glmTreat, especially unshrunk log-fold-changes
4.9 years ago swbarnes2 ★ 1.4k
0
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1
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409
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Answer: A: BiomaRt Error: "character string of length 1."
4.9 years ago swbarnes2 ★ 1.4k
0
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1
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1.4k
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Comment: C: DESeq2 analysis with multiple factors
4.9 years ago swbarnes2 ★ 1.4k
0
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6
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1.1k
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Anyone else having trouble with biomaRt (Oct 10, 2019)
ensembl biomaRt
updated 5.0 years ago by ★ 6.5k • written 5.0 years ago by ★ 1.4k
0
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1
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1.1k
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Comment: C: Anyone else having trouble with biomaRt (Oct 10, 2019)
5.0 years ago swbarnes2 ★ 1.4k
0
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1
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1.1k
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Comment: C: Anyone else having trouble with biomaRt (Oct 10, 2019)
5.0 years ago swbarnes2 ★ 1.4k
0
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0
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1.1k
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Answer: A: Paired t-test with DESeq2
5.0 years ago swbarnes2 ★ 1.4k
0
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1
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1.9k
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Answer: A: DESeq2: compare all tpts to baseline and pull results table accordingly
5.0 years ago swbarnes2 ★ 1.4k
0
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1
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2.2k
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Comment: C: Batch effects between different sequencing runs
5.0 years ago swbarnes2 ★ 1.4k
0
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2
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2.2k
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Answer: A: Batch effects between different sequencing runs
5.0 years ago swbarnes2 ★ 1.4k
2
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1
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1.4k
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Answer: A: bwa mem to feature Counts
5.0 years ago swbarnes2 ★ 1.4k
0
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1
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1.3k
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Answer: A: DEseq2 design for knockdown conditions and treatment
5.0 years ago swbarnes2 ★ 1.4k
0
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1
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739
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Comment: C: Responder Vs Non-Responders Paired Comparison DESeq2
5.0 years ago swbarnes2 ★ 1.4k
0
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2
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1.4k
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Comment: C: How to align to genome and transcriptome coordinates at the same time with STAR?
5.1 years ago swbarnes2 ★ 1.4k
2
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0
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572
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Answer: A: rlog in reference level
5.1 years ago swbarnes2 ★ 1.4k
0
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1
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1.5k
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Comment: C: is our edgeR code doing what we think it does?
5.1 years ago swbarnes2 ★ 1.4k
2
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2
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1.5k
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Answer: A: is our edgeR code doing what we think it does?
5.1 years ago swbarnes2 ★ 1.4k
1
vote
1
reply
1.2k
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Answer: A: Design for introducing batch effect in DESeq2
5.1 years ago swbarnes2 ★ 1.4k
1
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0
replies
1.3k
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Answer: A: gene Isoforms quantification using RNA-seq data
5.1 years ago swbarnes2 ★ 1.4k
1
vote
0
replies
995
views
Answer: A: How to perform RNA-seq with such MDS plot?
5.1 years ago swbarnes2 ★ 1.4k
0
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2
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8.9k
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Comment: C: Comparison between two different group's pathway analysis results
5.1 years ago swbarnes2 ★ 1.4k
0
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1
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2.3k
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Comment: C: Two controls in RNAseq formula for DESeq2
5.1 years ago swbarnes2 ★ 1.4k
0
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1
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2.3k
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Comment: C: Two controls in RNAseq formula for DESeq2
5.1 years ago swbarnes2 ★ 1.4k
0
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1
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2.3k
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Answer: A: Two controls in RNAseq formula for DESeq2
5.1 years ago swbarnes2 ★ 1.4k
0
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0
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733
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Comment: C: understanding DEseq2 interactions before/after releveling the baseline
5.2 years ago swbarnes2 ★ 1.4k
1
vote
0
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876
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Answer: A: deseq2 formula design
5.2 years ago swbarnes2 ★ 1.4k
0
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1
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1.1k
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Comment: C: Questions for ResultsNames() and the Contrast function
5.2 years ago swbarnes2 ★ 1.4k
2
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1
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3.3k
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Answer: A: Importance of Order in Design Formula
5.2 years ago swbarnes2 ★ 1.4k
0
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1
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2.7k
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Answer: A: deseq2 correction batch effect without design
5.2 years ago swbarnes2 ★ 1.4k
0
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0
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635
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Answer: A: DESeq2 "Not full rank" Error
5.2 years ago swbarnes2 ★ 1.4k
0
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1
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2.1k
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Answer: C: RNA-seq time course analysis with only one experimental condition
5.2 years ago swbarnes2 ★ 1.4k
0
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1
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2.0k
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Answer: A: Comparing two different sequencing method by DEseq2
5.2 years ago swbarnes2 ★ 1.4k
0
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2
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2.0k
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Comment: C: Difference of difference, paired design
5.2 years ago swbarnes2 ★ 1.4k
0
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1
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2.0k
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Answer: A: Difference of difference, paired design
5.2 years ago swbarnes2 ★ 1.4k
0
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0
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524
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Answer: A: Creating the correct design
5.2 years ago swbarnes2 ★ 1.4k
0
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1
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1.8k
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Comment: C: deseq2 pre filter rna seq
5.2 years ago swbarnes2 ★ 1.4k
0
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1
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2.2k
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Comment: C: Difference between gene-level test and transcript-level test with RATs (Relative
5.2 years ago swbarnes2 ★ 1.4k
0
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0
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790
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Comment: C: More Info on results names
5.2 years ago swbarnes2 ★ 1.4k
1
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1
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749
views
Answer: A: Batch correction for two conditions two batches
5.2 years ago swbarnes2 ★ 1.4k
0
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1
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1.3k
views
Answer: A: Deseq issues - pipeline all of a sudden stopped working
5.2 years ago swbarnes2 ★ 1.4k
456 results • Page 8 of 10
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