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2.9k
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Comment: C: DESeq2 Installation Errors
4.0 years ago swbarnes2 ★ 1.4k
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1
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1.3k
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Answer: C: Picking the right design formula
4.0 years ago swbarnes2 ★ 1.4k
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6.0k
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Comment: C: How to use RSEM value to find differentially expressed genes
4.1 years ago swbarnes2 ★ 1.4k
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0
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857
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Comment: C: DESeq2 reporting >10,000 DEGs
4.1 years ago swbarnes2 ★ 1.4k
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1
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857
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Comment: C: DESeq2 reporting >10,000 DEGs
4.1 years ago swbarnes2 ★ 1.4k
4
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1
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1.9k
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Answer: A: how to understand DESeq2 results comparison
4.1 years ago swbarnes2 ★ 1.4k
2
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0
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3.3k
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Comment: C: How to incorporate batch effect that is only present in one level into the desig
4.1 years ago swbarnes2 ★ 1.4k
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1
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2.3k
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Comment: C: Error Message in DESEQ (DESEQDataSetFromMatrix)
4.1 years ago swbarnes2 ★ 1.4k
1
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2
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1.2k
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Answer: A: DESeq2 res remove some genes
4.2 years ago swbarnes2 ★ 1.4k
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0
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4.0k
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Answer: A: Dealing with multi-overlapping and multi-mapping reads
4.2 years ago swbarnes2 ★ 1.4k
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1
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2.9k
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Comment: C: Convert mouse gene ids to hamster gene ids
4.2 years ago swbarnes2 ★ 1.4k
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1
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522
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Comment: C: Two data set: Control sample is one data set and Case is another data with Time-
4.2 years ago swbarnes2 ★ 1.4k
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0
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1.4k
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Answer: A: Custom Functional for automated DESeq2 running
4.3 years ago swbarnes2 ★ 1.4k
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1
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2.2k
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Comment: C: Filter Out Low Read Counts
4.3 years ago swbarnes2 ★ 1.4k
1
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0
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590
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Answer: A: size factor not 1
4.3 years ago swbarnes2 ★ 1.4k
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0
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517
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Comment: C: How to treat genes in RNAseq analyses
4.3 years ago swbarnes2 ★ 1.4k
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4
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1.2k
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Answer: A: To start organising data for DESeq2
4.4 years ago swbarnes2 ★ 1.4k
0
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1
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788
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Answer: A: Extraction of individual results from DESeq2 data
4.4 years ago swbarnes2 ★ 1.4k
0
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1
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1.6k
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Comment: C: Nested design matrix in edgeR
4.4 years ago swbarnes2 ★ 1.4k
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0
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3.0k
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Comment: C: Peer's Certificate issuer is not recognized
4.4 years ago swbarnes2 ★ 1.4k
1
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0
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541
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Comment: C: DESEQ2 error after adding batch in design
4.4 years ago swbarnes2 ★ 1.4k
0
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1
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1.5k
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Answer: A: Incomplete Install of Bioconductor Packages
4.4 years ago swbarnes2 ★ 1.4k
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3
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20k
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Comment: C: having trouble formatting data for DE analysis
4.4 years ago swbarnes2 ★ 1.4k
0
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1
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669
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Answer: A: Problem with batches and "Model matrix not full rank" during differential gene e
4.4 years ago swbarnes2 ★ 1.4k
1
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1
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924
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Answer: A: Time-series analysis with control and treated samples, and Fold Change extractio
4.4 years ago swbarnes2 ★ 1.4k
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1
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1.4k
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Answer: A: Data Structure for Read Count Analysis by DESeq2
4.4 years ago swbarnes2 ★ 1.4k
2
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2
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9.5k
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Answer: A: DESeq2 vs edagR Result analysis
4.4 years ago swbarnes2 ★ 1.4k
1
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0
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522
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Answer: A: The query to the BioMart webservice returned an invalid result: biomaRt expected
4.4 years ago swbarnes2 ★ 1.4k
0
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1
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3.0k
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Answer: A: How to use DESeqDataSetFromHTSeqCount
4.5 years ago swbarnes2 ★ 1.4k
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0
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641
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Answer: C: DESeq2 - why genes with very large variance between reps show up as significantl
4.5 years ago swbarnes2 ★ 1.4k
0
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0
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589
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Answer: A: biomaRt: The query to the BioMart webservice returned an invalid result: biomaRt
4.5 years ago swbarnes2 ★ 1.4k
0
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1
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1.7k
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Comment: C: Error:could not find function "DESeqDataSetFromHTSeqCount"
4.5 years ago swbarnes2 ★ 1.4k
1
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0
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583
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Answer: A: Differential Expression by Chromosome using edgeR
4.5 years ago swbarnes2 ★ 1.4k
1
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1
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10k
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Answer: A: BioMart: curl option when using getBM in loop
4.5 years ago swbarnes2 ★ 1.4k
0
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0
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1.9k
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Comment: C: biomaRt getBM() returns nothing most of the times
4.5 years ago swbarnes2 ★ 1.4k
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1
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1.9k
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Answer: A: biomaRt getBM() returns nothing most of the times
4.5 years ago swbarnes2 ★ 1.4k
1
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0
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4.5k
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Comment: C: R package for single-cell RNA-seq data from fastq to matrix
4.6 years ago swbarnes2 ★ 1.4k
0
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0
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4.5k
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Comment: C: R package for single-cell RNA-seq data from fastq to matrix
4.6 years ago swbarnes2 ★ 1.4k
1
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1
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427
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Answer: A: I have four groups in my RNAseq experiment and want to compare them all to each
4.6 years ago swbarnes2 ★ 1.4k
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1
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756
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Comment: C: biomaRt not returning correct lists
4.6 years ago swbarnes2 ★ 1.4k
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1
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2.9k
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Comment: C: DEseq2 design formula correcting for batch
4.6 years ago swbarnes2 ★ 1.4k
0
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1
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2.9k
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Comment: C: DEseq2 design formula correcting for batch
4.6 years ago swbarnes2 ★ 1.4k
0
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0
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735
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Comment: C: Design matrix design for the differentially expression analysis
4.6 years ago swbarnes2 ★ 1.4k
0
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0
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779
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Answer: A: DESeq2 design formula
4.6 years ago swbarnes2 ★ 1.4k
0
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1
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2.9k
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Comment: C: DEseq2 design formula correcting for batch
4.6 years ago swbarnes2 ★ 1.4k
0
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1
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2.9k
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Answer: A: DEseq2 design formula correcting for batch
4.6 years ago swbarnes2 ★ 1.4k
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0
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615
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Comment: C: package is not available
4.7 years ago swbarnes2 ★ 1.4k
0
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1
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321
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Answer: C: Raw RNAseq data upload in DEseq2
4.7 years ago swbarnes2 ★ 1.4k
1
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1
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1.7k
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Answer: A: How to extract DESeq2 results for a number of comparisons
4.7 years ago swbarnes2 ★ 1.4k
0
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0
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980
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Comment: C: Help with Deseq2 design
4.7 years ago swbarnes2 ★ 1.4k
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