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Comment: Comment: Using DESeq with 2 assays having 2 conditions
4.3 years ago swbarnes2 ★ 1.4k
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927
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Answer: Answer: Using DESeq with 2 assays having 2 conditions
4.3 years ago swbarnes2 ★ 1.4k
1
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1
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8.4k
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Answer: Answer: DESeq2 - Error: full model matrix is less than full rank
4.3 years ago swbarnes2 ★ 1.4k
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1.5k
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Comment: C: Extracting coordinates of points in an image
4.3 years ago swbarnes2 ★ 1.4k
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1
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1.4k
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Answer: A: how to deal with differential analysis between 3 groups in DESeq2?
4.4 years ago swbarnes2 ★ 1.4k
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588
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DESeq on tissue mixing experiment
deseq2
updated 4.4 years ago by 43k • written 4.4 years ago by ★ 1.4k
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1.6k
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Comment: C: How can I combine results tables into a single output?
4.4 years ago swbarnes2 ★ 1.4k
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5.5k
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Comment: C: How to add pseudocount to DESeq2 dds object
4.4 years ago swbarnes2 ★ 1.4k
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1
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5.5k
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Answer: A: How to add pseudocount to DESeq2 dds object
4.4 years ago swbarnes2 ★ 1.4k
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3.3k
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Comment: C: DESeq2 Installation Errors
4.4 years ago swbarnes2 ★ 1.4k
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1
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1.4k
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Answer: C: Picking the right design formula
4.4 years ago swbarnes2 ★ 1.4k
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6.7k
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Comment: C: How to use RSEM value to find differentially expressed genes
4.5 years ago swbarnes2 ★ 1.4k
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0
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953
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Comment: C: DESeq2 reporting >10,000 DEGs
4.5 years ago swbarnes2 ★ 1.4k
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1
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953
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Comment: C: DESeq2 reporting >10,000 DEGs
4.5 years ago swbarnes2 ★ 1.4k
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2.1k
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Answer: A: how to understand DESeq2 results comparison
4.5 years ago swbarnes2 ★ 1.4k
2
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3.6k
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Comment: C: How to incorporate batch effect that is only present in one level into the desig
4.5 years ago swbarnes2 ★ 1.4k
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1
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2.6k
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Comment: C: Error Message in DESEQ (DESEQDataSetFromMatrix)
4.5 years ago swbarnes2 ★ 1.4k
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2
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1.3k
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Answer: A: DESeq2 res remove some genes
4.5 years ago swbarnes2 ★ 1.4k
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0
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4.3k
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Answer: A: Dealing with multi-overlapping and multi-mapping reads
4.6 years ago swbarnes2 ★ 1.4k
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1
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3.1k
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Comment: C: Convert mouse gene ids to hamster gene ids
4.6 years ago swbarnes2 ★ 1.4k
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1
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598
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Comment: C: Two data set: Control sample is one data set and Case is another data with Time-
4.6 years ago swbarnes2 ★ 1.4k
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1.5k
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Answer: A: Custom Functional for automated DESeq2 running
4.6 years ago swbarnes2 ★ 1.4k
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1
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2.5k
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Comment: C: Filter Out Low Read Counts
4.6 years ago swbarnes2 ★ 1.4k
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0
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665
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Answer: A: size factor not 1
4.7 years ago swbarnes2 ★ 1.4k
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0
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606
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Comment: C: How to treat genes in RNAseq analyses
4.7 years ago swbarnes2 ★ 1.4k
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4
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1.3k
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Answer: A: To start organising data for DESeq2
4.7 years ago swbarnes2 ★ 1.4k
0
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1
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884
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Answer: A: Extraction of individual results from DESeq2 data
4.7 years ago swbarnes2 ★ 1.4k
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1
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1.7k
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Comment: C: Nested design matrix in edgeR
4.7 years ago swbarnes2 ★ 1.4k
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0
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3.2k
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Comment: C: Peer's Certificate issuer is not recognized
4.7 years ago swbarnes2 ★ 1.4k
1
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0
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612
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Comment: C: DESEQ2 error after adding batch in design
4.8 years ago swbarnes2 ★ 1.4k
0
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1
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1.7k
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Answer: A: Incomplete Install of Bioconductor Packages
4.8 years ago swbarnes2 ★ 1.4k
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3
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21k
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Comment: C: having trouble formatting data for DE analysis
4.8 years ago swbarnes2 ★ 1.4k
0
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1
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752
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Answer: A: Problem with batches and "Model matrix not full rank" during differential gene e
4.8 years ago swbarnes2 ★ 1.4k
1
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1
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1.0k
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Answer: A: Time-series analysis with control and treated samples, and Fold Change extractio
4.8 years ago swbarnes2 ★ 1.4k
0
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1
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1.7k
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Answer: A: Data Structure for Read Count Analysis by DESeq2
4.8 years ago swbarnes2 ★ 1.4k
2
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2
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11k
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Answer: A: DESeq2 vs edagR Result analysis
4.8 years ago swbarnes2 ★ 1.4k
1
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0
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576
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Answer: A: The query to the BioMart webservice returned an invalid result: biomaRt expected
4.8 years ago swbarnes2 ★ 1.4k
0
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1
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3.3k
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Answer: A: How to use DESeqDataSetFromHTSeqCount
4.8 years ago swbarnes2 ★ 1.4k
0
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0
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718
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Answer: C: DESeq2 - why genes with very large variance between reps show up as significantl
4.8 years ago swbarnes2 ★ 1.4k
0
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0
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653
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Answer: A: biomaRt: The query to the BioMart webservice returned an invalid result: biomaRt
4.8 years ago swbarnes2 ★ 1.4k
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1
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1.8k
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Comment: C: Error:could not find function "DESeqDataSetFromHTSeqCount"
4.8 years ago swbarnes2 ★ 1.4k
1
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0
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647
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Answer: A: Differential Expression by Chromosome using edgeR
4.9 years ago swbarnes2 ★ 1.4k
1
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1
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11k
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Answer: A: BioMart: curl option when using getBM in loop
4.9 years ago swbarnes2 ★ 1.4k
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0
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2.1k
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Comment: C: biomaRt getBM() returns nothing most of the times
4.9 years ago swbarnes2 ★ 1.4k
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1
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2.1k
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Answer: A: biomaRt getBM() returns nothing most of the times
4.9 years ago swbarnes2 ★ 1.4k
1
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0
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4.9k
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Comment: C: R package for single-cell RNA-seq data from fastq to matrix
4.9 years ago swbarnes2 ★ 1.4k
0
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0
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4.9k
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Comment: C: R package for single-cell RNA-seq data from fastq to matrix
5.0 years ago swbarnes2 ★ 1.4k
1
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1
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467
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Answer: A: I have four groups in my RNAseq experiment and want to compare them all to each
5.0 years ago swbarnes2 ★ 1.4k
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1
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842
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Comment: C: biomaRt not returning correct lists
5.0 years ago swbarnes2 ★ 1.4k
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1
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3.2k
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Comment: C: DEseq2 design formula correcting for batch
5.0 years ago swbarnes2 ★ 1.4k
464 results • Page 7 of 10
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