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Answer: Answer: DESeq2 for longitudinal data
3.6 years ago swbarnes2 ★ 1.4k
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1.5k
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Answer: Answer: No counts, just fold change data
3.6 years ago swbarnes2 ★ 1.4k
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783
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Answer: Answer: DESeq2: Paired samples (before and after treatment) with different responses
3.7 years ago swbarnes2 ★ 1.4k
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Comment: Comment: Contrasting LogFCs in DESeq2
3.7 years ago swbarnes2 ★ 1.4k
2
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731
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Answer: Answer: How to remove batch effect from multiple rna-seq dataset before running deseq2
3.7 years ago swbarnes2 ★ 1.4k
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1.3k
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Answer: Answer: Creating a DESeqDataSet from a RangedSummarizedExperiment - where is the design
3.7 years ago swbarnes2 ★ 1.4k
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1.2k
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Answer: Answer: Contrasting LogFCs in DESeq2
3.7 years ago swbarnes2 ★ 1.4k
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0
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936
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Answer: Answer: biomaRt - rice genes database not working
3.7 years ago swbarnes2 ★ 1.4k
1
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1
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2.6k
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Answer: Answer: DESeq2 numbers of DEGs not consistent with PCA plot
3.7 years ago swbarnes2 ★ 1.4k
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1.5k
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Answer: Answer: Grouping DESEQ2 with additional variable
3.7 years ago swbarnes2 ★ 1.4k
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1.2k
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Answer: Answer: DeSeq2 with 2 conditions and 3 time points
3.7 years ago swbarnes2 ★ 1.4k
2
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802
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Answer: Answer: DESEQ2 colData object
3.7 years ago swbarnes2 ★ 1.4k
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2.0k
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Answer: Answer: How to plot gene counts using plotCounts() with just an individual contrast?
3.7 years ago swbarnes2 ★ 1.4k
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1.0k
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Answer: Answer: DESeq2 desing formula for cell fraction and siRNA scramble
3.7 years ago swbarnes2 ★ 1.4k
0
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1
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838
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Answer: Answer: broken link to DESeq
3.8 years ago swbarnes2 ★ 1.4k
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1
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3.5k
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Comment: Comment: DESeq2 comparison two cell types and two genotypes
3.8 years ago swbarnes2 ★ 1.4k
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610
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Correcting partially penetrant batch effect
DESeq2
updated 3.8 years ago by 43k • written 3.8 years ago by ★ 1.4k
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Comment: Comment: DESeq2 two conditions with interaction
3.8 years ago swbarnes2 ★ 1.4k
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15
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1.6k
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Comment: Comment: DiffBind DEseq
3.8 years ago swbarnes2 ★ 1.4k
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1
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1.6k
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Comment: Comment: DiffBind DEseq
3.8 years ago swbarnes2 ★ 1.4k
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1.0k
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Answer: Answer: is the P value reliable if the counts are Low counts across the sample ?
3.9 years ago swbarnes2 ★ 1.4k
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1.5k
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Answer: Answer: Technical-biological replicates in edgeR
3.9 years ago swbarnes2 ★ 1.4k
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1
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7.8k
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Comment: Comment: DESeq2 - multifactorial design
3.9 years ago swbarnes2 ★ 1.4k
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0
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7.8k
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Comment: Comment: DESeq2 - multifactorial design
3.9 years ago swbarnes2 ★ 1.4k
1
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0
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7.8k
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Answer: Answer: DESeq2 - multifactorial design
3.9 years ago swbarnes2 ★ 1.4k
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0
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775
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Answer: Answer: DESeq2 calling DEGs despite detection in few replicates
3.9 years ago swbarnes2 ★ 1.4k
1
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1
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2.7k
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Answer: Answer: error when reading fastq file
3.9 years ago swbarnes2 ★ 1.4k
1
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1
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1.8k
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Answer: Answer: Batch correction and DESeq2
3.9 years ago swbarnes2 ★ 1.4k
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0
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2.4k
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Answer: Answer: How to setup sample design in DESeq2
3.9 years ago swbarnes2 ★ 1.4k
0
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1
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1.0k
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Comment: Comment: I can't get the 2 by 2 comparisons that I need because the matrix is not full of
4.0 years ago swbarnes2 ★ 1.4k
1
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0
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1.4k
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Answer: Answer: DESeq2 in R
4.0 years ago swbarnes2 ★ 1.4k
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0
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2.0k
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Comment: Comment: DEseq2: setting up the correct contrast.
4.0 years ago swbarnes2 ★ 1.4k
0
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2
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2.0k
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Comment: Comment: RUVSeq package for adjusting two variables of interest
4.0 years ago swbarnes2 ★ 1.4k
0
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1
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2.0k
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Answer: Answer: DEseq2: setting up the correct contrast.
4.0 years ago swbarnes2 ★ 1.4k
1
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3
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2.1k
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Answer: Answer: Unable to run "library(DESeq2)" successfully
4.0 years ago swbarnes2 ★ 1.4k
0
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0
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1.2k
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Comment: Comment: DESeq2 anormally high estimation of Log2FoldChange
4.0 years ago swbarnes2 ★ 1.4k
0
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0
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1.2k
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Answer: Answer: DESeq2 anormally high estimation of Log2FoldChange
4.0 years ago swbarnes2 ★ 1.4k
0
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0
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1.6k
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Comment: Comment: P adjusted values in Deseq2
4.1 years ago swbarnes2 ★ 1.4k
0
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1
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2.9k
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Comment: Comment: Using the correct counts with lm function linear model
4.1 years ago swbarnes2 ★ 1.4k
0
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1
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2.9k
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Comment: Comment: Using the correct counts with lm function linear model
4.1 years ago swbarnes2 ★ 1.4k
2
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1
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1.3k
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Answer: Answer: Design formula for pairwise comparison of experimental setup with multiple facto
4.1 years ago swbarnes2 ★ 1.4k
0
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0
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1.2k
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Answer: Answer: Compining DESeq2 output with biomart query to display DE genes rather than DE en
4.2 years ago swbarnes2 ★ 1.4k
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0
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1.3k
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Comment: Comment: R package to change protein *.msf file to any readable file
4.2 years ago swbarnes2 ★ 1.4k
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0
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1.2k
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Comment: Comment: Limma: Differential expression with two batch effects , location and batch.
4.2 years ago swbarnes2 ★ 1.4k
0
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1
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3.4k
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Comment: Comment: Compare 3 RNASeq groups with no control in DESeq2
4.2 years ago swbarnes2 ★ 1.4k
0
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1
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980
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Comment: Comment: DESeq2 interaction study
4.2 years ago swbarnes2 ★ 1.4k
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1
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980
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Answer: Answer: DESeq2 interaction study
4.2 years ago swbarnes2 ★ 1.4k
1
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0
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612
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Answer: Answer: What defines a batch in DESeq2 analysis
4.2 years ago swbarnes2 ★ 1.4k
0
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0
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1.4k
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Answer: Answer: How to prepare a file to DESeq2 analysis?
4.2 years ago swbarnes2 ★ 1.4k
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0
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4.1k
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Answer: Answer: Extracting Sequences from Fasta Files with Rsamtools
4.2 years ago swbarnes2 ★ 1.4k
464 results • Page 6 of 10
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