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Answer: Answer: Grouping DESEQ2 with additional variable
3.4 years ago swbarnes2 ★ 1.4k
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Answer: Answer: DeSeq2 with 2 conditions and 3 time points
3.4 years ago swbarnes2 ★ 1.4k
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740
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Answer: Answer: DESEQ2 colData object
3.4 years ago swbarnes2 ★ 1.4k
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1.8k
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Answer: Answer: How to plot gene counts using plotCounts() with just an individual contrast?
3.4 years ago swbarnes2 ★ 1.4k
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956
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Answer: Answer: DESeq2 desing formula for cell fraction and siRNA scramble
3.4 years ago swbarnes2 ★ 1.4k
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797
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Answer: Answer: broken link to DESeq
3.4 years ago swbarnes2 ★ 1.4k
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3.3k
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Comment: Comment: DESeq2 comparison two cell types and two genotypes
3.4 years ago swbarnes2 ★ 1.4k
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562
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Correcting partially penetrant batch effect
DESeq2
updated 3.4 years ago by 42k • written 3.4 years ago by ★ 1.4k
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3.5k
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Comment: Comment: DESeq2 two conditions with interaction
3.5 years ago swbarnes2 ★ 1.4k
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15
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1.5k
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Comment: Comment: DiffBind DEseq
3.5 years ago swbarnes2 ★ 1.4k
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1.5k
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Comment: Comment: DiffBind DEseq
3.5 years ago swbarnes2 ★ 1.4k
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0
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956
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Answer: Answer: is the P value reliable if the counts are Low counts across the sample ?
3.5 years ago swbarnes2 ★ 1.4k
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Answer: Answer: Technical-biological replicates in edgeR
3.5 years ago swbarnes2 ★ 1.4k
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7.0k
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Comment: Comment: DESeq2 - multifactorial design
3.5 years ago swbarnes2 ★ 1.4k
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7.0k
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Comment: Comment: DESeq2 - multifactorial design
3.6 years ago swbarnes2 ★ 1.4k
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0
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7.0k
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Answer: Answer: DESeq2 - multifactorial design
3.6 years ago swbarnes2 ★ 1.4k
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0
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713
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Answer: Answer: DESeq2 calling DEGs despite detection in few replicates
3.6 years ago swbarnes2 ★ 1.4k
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1
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2.4k
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Answer: Answer: error when reading fastq file
3.6 years ago swbarnes2 ★ 1.4k
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1
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1.6k
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Answer: Answer: Batch correction and DESeq2
3.6 years ago swbarnes2 ★ 1.4k
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0
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2.2k
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Answer: Answer: How to setup sample design in DESeq2
3.6 years ago swbarnes2 ★ 1.4k
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1
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939
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Comment: Comment: I can't get the 2 by 2 comparisons that I need because the matrix is not full of
3.6 years ago swbarnes2 ★ 1.4k
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0
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1.3k
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Answer: Answer: DESeq2 in R
3.6 years ago swbarnes2 ★ 1.4k
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1.9k
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Comment: Comment: DEseq2: setting up the correct contrast.
3.6 years ago swbarnes2 ★ 1.4k
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2
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1.8k
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Comment: Comment: RUVSeq package for adjusting two variables of interest
3.6 years ago swbarnes2 ★ 1.4k
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1
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1.9k
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Answer: Answer: DEseq2: setting up the correct contrast.
3.6 years ago swbarnes2 ★ 1.4k
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3
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1.9k
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Answer: Answer: Unable to run "library(DESeq2)" successfully
3.6 years ago swbarnes2 ★ 1.4k
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0
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1.1k
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Comment: Comment: DESeq2 anormally high estimation of Log2FoldChange
3.7 years ago swbarnes2 ★ 1.4k
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0
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1.1k
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Answer: Answer: DESeq2 anormally high estimation of Log2FoldChange
3.7 years ago swbarnes2 ★ 1.4k
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0
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1.5k
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Comment: Comment: P adjusted values in Deseq2
3.7 years ago swbarnes2 ★ 1.4k
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1
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2.7k
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Comment: Comment: Using the correct counts with lm function linear model
3.7 years ago swbarnes2 ★ 1.4k
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1
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2.7k
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Comment: Comment: Using the correct counts with lm function linear model
3.7 years ago swbarnes2 ★ 1.4k
2
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1
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1.2k
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Answer: Answer: Design formula for pairwise comparison of experimental setup with multiple facto
3.7 years ago swbarnes2 ★ 1.4k
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0
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1.1k
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Answer: Answer: Compining DESeq2 output with biomart query to display DE genes rather than DE en
3.8 years ago swbarnes2 ★ 1.4k
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0
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1.2k
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Comment: Comment: R package to change protein *.msf file to any readable file
3.8 years ago swbarnes2 ★ 1.4k
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0
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1.1k
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Comment: Comment: Limma: Differential expression with two batch effects , location and batch.
3.8 years ago swbarnes2 ★ 1.4k
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1
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3.1k
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Comment: Comment: Compare 3 RNASeq groups with no control in DESeq2
3.9 years ago swbarnes2 ★ 1.4k
0
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1
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899
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Comment: Comment: DESeq2 interaction study
3.9 years ago swbarnes2 ★ 1.4k
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1
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899
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Answer: Answer: DESeq2 interaction study
3.9 years ago swbarnes2 ★ 1.4k
1
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0
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553
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Answer: Answer: What defines a batch in DESeq2 analysis
3.9 years ago swbarnes2 ★ 1.4k
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0
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1.1k
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Answer: Answer: How to prepare a file to DESeq2 analysis?
3.9 years ago swbarnes2 ★ 1.4k
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0
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3.8k
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Answer: Answer: Extracting Sequences from Fasta Files with Rsamtools
3.9 years ago swbarnes2 ★ 1.4k
0
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1
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850
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Comment: Comment: Using DESeq with 2 assays having 2 conditions
3.9 years ago swbarnes2 ★ 1.4k
1
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1
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850
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Answer: Answer: Using DESeq with 2 assays having 2 conditions
3.9 years ago swbarnes2 ★ 1.4k
1
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1
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7.7k
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Answer: Answer: DESeq2 - Error: full model matrix is less than full rank
3.9 years ago swbarnes2 ★ 1.4k
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0
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1.4k
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Comment: C: Extracting coordinates of points in an image
3.9 years ago swbarnes2 ★ 1.4k
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1
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1.2k
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Answer: A: how to deal with differential analysis between 3 groups in DESeq2?
4.0 years ago swbarnes2 ★ 1.4k
0
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1
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544
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DESeq on tissue mixing experiment
deseq2
updated 4.0 years ago by 42k • written 4.0 years ago by ★ 1.4k
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1
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1.4k
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Comment: C: How can I combine results tables into a single output?
4.0 years ago swbarnes2 ★ 1.4k
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0
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5.1k
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Comment: C: How to add pseudocount to DESeq2 dds object
4.0 years ago swbarnes2 ★ 1.4k
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1
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5.1k
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Answer: A: How to add pseudocount to DESeq2 dds object
4.0 years ago swbarnes2 ★ 1.4k
456 results • Page 6 of 10
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