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Comment: Comment: Three conditions and two time points
3.0 years ago swbarnes2 ★ 1.4k
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Comment: Comment: DESeq2 differential expression analysis of protein coding genes only
3.0 years ago swbarnes2 ★ 1.4k
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1.7k
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Comment: Comment: Three conditions and two time points
3.0 years ago swbarnes2 ★ 1.4k
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1
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1.7k
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Comment: Comment: Three conditions and two time points
3.0 years ago swbarnes2 ★ 1.4k
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Comment: Comment: Remove genes in a list from cts
3.0 years ago swbarnes2 ★ 1.4k
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1.7k
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Answer: Answer: Three conditions and two time points
3.0 years ago swbarnes2 ★ 1.4k
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0
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1.2k
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Comment: Comment: Remove genes in a list from cts
3.0 years ago swbarnes2 ★ 1.4k
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3.3k
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Answer: Answer: Question on the fold change estimate
3.0 years ago swbarnes2 ★ 1.4k
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Comment: Comment: scRNAseq analysis on multiple datasets
3.0 years ago swbarnes2 ★ 1.4k
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Answer: Answer: DESeq2: All samples have 0 counts for all genes. check the counting script
3.0 years ago swbarnes2 ★ 1.4k
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2.0k
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Comment: Comment: Interpretation of DESeq2 results with 3 factorial design with interaction terms.
3.0 years ago swbarnes2 ★ 1.4k
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Answer: Answer: Interpretation of DESeq2 results with 3 factorial design with interaction terms.
3.0 years ago swbarnes2 ★ 1.4k
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1.5k
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Comment: Comment: Understanding output of Negative Binomial in DESeq2
3.0 years ago swbarnes2 ★ 1.4k
1
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1
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706
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Answer: Answer: Log fold change interpretation of time series with Wald test
3.1 years ago swbarnes2 ★ 1.4k
2
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1.1k
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Answer: Answer: Sequencing depth before and aftr normalisation with DESEQ2 doesn't look as expec
3.1 years ago swbarnes2 ★ 1.4k
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5.7k
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Comment: Comment: How does edgeR calculate fold change?
3.1 years ago swbarnes2 ★ 1.4k
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5.7k
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Answer: Answer: How does edgeR calculate fold change?
3.1 years ago swbarnes2 ★ 1.4k
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723
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Comment: Comment: normalising Biological replicates for differential analysis
3.1 years ago swbarnes2 ★ 1.4k
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723
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Comment: Comment: normalising Biological replicates for differential analysis
3.1 years ago swbarnes2 ★ 1.4k
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1.0k
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Comment: Comment: DESEQ PCA
3.1 years ago swbarnes2 ★ 1.4k
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1.0k
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Comment: Comment: DESEQ PCA
3.1 years ago swbarnes2 ★ 1.4k
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1.8k
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Answer: Answer: Error in curl; timeout when using biomaRt
3.1 years ago swbarnes2 ★ 1.4k
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0
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703
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Comment: Comment: DeSeq2_ result different _3 factor level Deseq2 vs 2 factor level Deseq2
3.1 years ago swbarnes2 ★ 1.4k
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2
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Comment: Comment: Running the DESeq2 "DESeqDataSetFromMatrix" function returns a dimname error
3.2 years ago swbarnes2 ★ 1.4k
0
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2.6k
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Comment: Comment: Running the DESeq2 "DESeqDataSetFromMatrix" function returns a dimname error
3.2 years ago swbarnes2 ★ 1.4k
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1
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1.7k
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Comment: Comment: Differential Expression analysis of specific list of genes
3.2 years ago swbarnes2 ★ 1.4k
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1
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1.7k
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Answer: Answer: Differential Expression analysis of specific list of genes
3.2 years ago swbarnes2 ★ 1.4k
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1
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1.4k
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Answer: Answer: Deseq paired samples
3.2 years ago swbarnes2 ★ 1.4k
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1
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6.6k
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Comment: Comment: package to manipulate GTF files
3.2 years ago swbarnes2 ★ 1.4k
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1
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6.6k
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Comment: Comment: package to manipulate GTF files
3.2 years ago swbarnes2 ★ 1.4k
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1
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3.6k
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Comment: Comment: Problem with DESeq2 installation using in R 1.4.1717
3.2 years ago swbarnes2 ★ 1.4k
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1.3k
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Comment: Comment: DeSEq2-- error- count matrix
3.2 years ago swbarnes2 ★ 1.4k
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0
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1.6k
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Comment: Comment: How to correlate bp and Chr columns in the corresponding RSID column?
3.2 years ago swbarnes2 ★ 1.4k
0
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1
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1.1k
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Answer: Answer: tximport fails when RSEM output options produce files with additional columns?
3.2 years ago swbarnes2 ★ 1.4k
0
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1
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2.8k
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Answer: Answer: DESeq2 question: why I got discrepancy results for DEGs when using different way
3.2 years ago swbarnes2 ★ 1.4k
0
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1
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2.6k
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Answer: Answer: undefined columns selected
3.2 years ago swbarnes2 ★ 1.4k
1
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1
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755
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Answer: Answer: Doing multiple comparisons in a DESeq2 object with multiple conditions
3.2 years ago swbarnes2 ★ 1.4k
0
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0
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2.7k
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Comment: Comment: extract fold change of a list of gene from EdgeR?
3.2 years ago swbarnes2 ★ 1.4k
0
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1
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1.6k
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Comment: Comment: Error: $ operator is invalid for atomic vectors
3.2 years ago swbarnes2 ★ 1.4k
0
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0
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2.7k
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Comment: Comment: extract fold change of a list of gene from EdgeR?
3.2 years ago swbarnes2 ★ 1.4k
0
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1
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2.7k
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Comment: Comment: extract fold change of a list of gene from EdgeR?
3.2 years ago swbarnes2 ★ 1.4k
0
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1
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2.0k
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Answer: Answer: DESeq2 for longitudinal data
3.2 years ago swbarnes2 ★ 1.4k
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1
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1.4k
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Answer: Answer: No counts, just fold change data
3.3 years ago swbarnes2 ★ 1.4k
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0
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712
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Answer: Answer: DESeq2: Paired samples (before and after treatment) with different responses
3.3 years ago swbarnes2 ★ 1.4k
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0
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1.1k
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Comment: Comment: Contrasting LogFCs in DESeq2
3.3 years ago swbarnes2 ★ 1.4k
2
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1
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674
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Answer: Answer: How to remove batch effect from multiple rna-seq dataset before running deseq2
3.3 years ago swbarnes2 ★ 1.4k
0
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1
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1.2k
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Answer: Answer: Creating a DESeqDataSet from a RangedSummarizedExperiment - where is the design
3.3 years ago swbarnes2 ★ 1.4k
0
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1
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1.1k
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Answer: Answer: Contrasting LogFCs in DESeq2
3.3 years ago swbarnes2 ★ 1.4k
0
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0
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851
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Answer: Answer: biomaRt - rice genes database not working
3.3 years ago swbarnes2 ★ 1.4k
1
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1
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2.4k
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Answer: Answer: DESeq2 numbers of DEGs not consistent with PCA plot
3.4 years ago swbarnes2 ★ 1.4k
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