Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
1
reply
1.2k
views
Answer: Answer: Seeking help in multifactor differential gene expression analysis using DESeq2.
2.5 years ago swbarnes2 ★ 1.4k
2
votes
1
reply
3.6k
views
Comment: Comment: Using Age or other numerical variable to model expression in deseq2
2.6 years ago swbarnes2 ★ 1.4k
0
votes
0
replies
1.4k
views
Comment: Comment: I got error message about DESeqDataSetFromMatrix
2.6 years ago swbarnes2 ★ 1.4k
0
votes
1
reply
1.4k
views
Answer: Answer: I got error message about DESeqDataSetFromMatrix
2.6 years ago swbarnes2 ★ 1.4k
1
vote
1
reply
748
views
Answer: Answer: DESeq2 changing Interaction term interpretation
2.6 years ago swbarnes2 ★ 1.4k
1
vote
0
replies
2.4k
views
Answer: Answer: Log2FoldChange and normalized count values are not consistent?
2.6 years ago swbarnes2 ★ 1.4k
2
votes
0
replies
1.9k
views
Answer: Answer: Difference between raw counts and featureCounts for DESeq2
2.7 years ago swbarnes2 ★ 1.4k
1
vote
1
reply
994
views
Answer: Answer: DESeq2 paired design: Differential list comparing fold changes
2.7 years ago swbarnes2 ★ 1.4k
0
votes
0
replies
3.6k
views
Comment: Comment: HTSeq Counts no longer available
2.7 years ago swbarnes2 ★ 1.4k
0
votes
0
replies
11k
views
Comment: Comment: is it possible to use TPM in DESeq2 ?
2.7 years ago swbarnes2 ★ 1.4k
0
votes
1
reply
11k
views
Comment: Comment: is it possible to use TPM in DESeq2 ?
2.7 years ago swbarnes2 ★ 1.4k
0
votes
1
reply
4.4k
views
Answer: Answer: DESeq2 how to specify contrast to test difference of differences
2.7 years ago swbarnes2 ★ 1.4k
0
votes
0
replies
2.9k
views
Comment: Comment: DESeq2::plotPCA plotting error
2.7 years ago swbarnes2 ★ 1.4k
3
votes
2
replies
2.9k
views
Answer: Answer: DESeq2::plotPCA plotting error
2.7 years ago swbarnes2 ★ 1.4k
0
votes
0
replies
5.6k
views
Comment: Comment: Best way to do RNA-seq analysis for a small number of samples obtained from 2 di
2.8 years ago swbarnes2 ★ 1.4k
0
votes
0
replies
727
views
Answer: Answer: batch effects for a single sample?
2.8 years ago swbarnes2 ★ 1.4k
0
votes
0
replies
979
views
Answer: Answer: Getting erros from dds
2.8 years ago swbarnes2 ★ 1.4k
0
votes
0
replies
1.8k
views
Answer: Answer: DESeq2 comparisons with multiple experimental variables?
2.8 years ago swbarnes2 ★ 1.4k
1
vote
1
reply
2.3k
views
Answer: Answer: Time series and interaction in DESeq2
2.8 years ago swbarnes2 ★ 1.4k
0
votes
0
replies
1.0k
views
Answer: Answer: Setting up read count data for DESeq2 to create a dds object
2.8 years ago swbarnes2 ★ 1.4k
1
vote
0
replies
1.0k
views
Comment: Comment: Setting up read count data for DESeq2 to create a dds object
2.8 years ago swbarnes2 ★ 1.4k
0
votes
1
reply
1.4k
views
Comment: Comment: ScRNA sequencing data _Seurat_Object_DESEQ2_Analayis_DGE
2.8 years ago swbarnes2 ★ 1.4k
0
votes
1
reply
11k
views
Comment: Comment: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.
2.9 years ago swbarnes2 ★ 1.4k
0
votes
0
replies
1.5k
views
Comment: Comment: Replicating iDEP parameters in DESeq2; two conditions and an interaction term.
2.9 years ago swbarnes2 ★ 1.4k
0
votes
0
replies
2.0k
views
Answer: Answer: Understandig listValues argument of DESEQ in multiple group comparisons
2.9 years ago swbarnes2 ★ 1.4k
0
votes
0
replies
1.6k
views
Comment: Comment: Multi-factor paired RNAseq differential analysis with DEseq2
3.0 years ago swbarnes2 ★ 1.4k
0
votes
2
replies
1.6k
views
Answer: Answer: Multi-factor paired RNAseq differential analysis with DEseq2
3.0 years ago swbarnes2 ★ 1.4k
0
votes
0
replies
1.5k
views
Comment: Comment: DE analysis model matrix for paired samples
3.0 years ago swbarnes2 ★ 1.4k
0
votes
0
replies
2.0k
views
Comment: Comment: PlotPCA in DESeq2 doesn't produce exactly the same result as prcomp
3.0 years ago swbarnes2 ★ 1.4k
0
votes
0
replies
4.8k
views
Comment: Comment: How to remove batch effect from RNA-seq without count data?
3.0 years ago swbarnes2 ★ 1.4k
0
votes
1
reply
2.3k
views
Comment: Comment: DESeq2 analysis for targeted RNA-seq
3.0 years ago swbarnes2 ★ 1.4k
0
votes
0
replies
8.8k
views
Comment: Comment: Adding sample label to PCA plot
3.0 years ago swbarnes2 ★ 1.4k
2
votes
0
replies
3.4k
views
Answer: Answer: Start to End RNA-Seq with R Bioconductor
3.0 years ago swbarnes2 ★ 1.4k
0
votes
0
replies
1.4k
views
Comment: Comment: sigh of log2FC values in DESeq2
3.1 years ago swbarnes2 ★ 1.4k
0
votes
1
reply
5.1k
views
Answer: Answer: Deseq2 normalization for WGCNA
3.1 years ago swbarnes2 ★ 1.4k
1
vote
1
reply
2.2k
views
Answer: Answer: DESeq2 - batch, condition and tissue information
3.1 years ago swbarnes2 ★ 1.4k
0
votes
1
reply
1.8k
views
Answer: Answer: NA values for mitochondrial gene percentage
3.1 years ago swbarnes2 ★ 1.4k
1
vote
1
reply
1.6k
views
Answer: Answer: Design formula in DESeq2
3.1 years ago swbarnes2 ★ 1.4k
1
vote
1
reply
1.1k
views
Comment: Comment: DESEQ2 Results log2fold and pvalue changes after removing genes
3.1 years ago swbarnes2 ★ 1.4k
0
votes
1
reply
1.6k
views
Answer: Answer: tximport question on what counts to use for LogFC calculations
3.1 years ago swbarnes2 ★ 1.4k
0
votes
0
replies
964
views
Comment: Comment: Troubleshooting DESeq2 Analysis: no DE genes found in subset
3.2 years ago swbarnes2 ★ 1.4k
0
votes
0
replies
908
views
Answer: Answer: DESeq2: Difference between two groups of conditions
3.2 years ago swbarnes2 ★ 1.4k
1
vote
0
replies
1.9k
views
Answer: Answer: Which rlog should I use for DESeq2 analysis
3.2 years ago swbarnes2 ★ 1.4k
0
votes
1
reply
760
views
Comment: Comment: Which interactions terms to choose?
3.2 years ago swbarnes2 ★ 1.4k
0
votes
1
reply
961
views
Answer: Answer: Complex Contrast in DESeq2
3.2 years ago swbarnes2 ★ 1.4k
0
votes
0
replies
1.3k
views
Answer: Answer: DESeq2 interaction terms in 2x2x2 factorial design
3.2 years ago swbarnes2 ★ 1.4k
0
votes
0
replies
2.2k
views
Comment: Comment: Rsamtools : Extracting Unmapped Reads from BAM file
3.2 years ago swbarnes2 ★ 1.4k
0
votes
0
replies
1.0k
views
Answer: Answer: DESeq2 ratio of ratios and p-value
3.2 years ago swbarnes2 ★ 1.4k
0
votes
1
reply
4.1k
views
Comment: Comment: Help with this in Rstudio - ERROR: the BAM input file, 'sample.bam', doesn't hav
3.2 years ago swbarnes2 ★ 1.4k
2
votes
1
reply
1.9k
views
Answer: Answer: Batch effect from to sequencing data at differents depths
3.2 years ago swbarnes2 ★ 1.4k
464 results • Page 4 of 10
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6