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Comment: Comment: HTSeq Counts no longer available
2.4 years ago swbarnes2 ★ 1.4k
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Comment: Comment: is it possible to use TPM in DESeq2 ?
2.4 years ago swbarnes2 ★ 1.4k
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Comment: Comment: is it possible to use TPM in DESeq2 ?
2.4 years ago swbarnes2 ★ 1.4k
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Answer: Answer: DESeq2 how to specify contrast to test difference of differences
2.4 years ago swbarnes2 ★ 1.4k
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Comment: Comment: DESeq2::plotPCA plotting error
2.4 years ago swbarnes2 ★ 1.4k
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Answer: Answer: DESeq2::plotPCA plotting error
2.4 years ago swbarnes2 ★ 1.4k
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Comment: Comment: Best way to do RNA-seq analysis for a small number of samples obtained from 2 di
2.4 years ago swbarnes2 ★ 1.4k
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662
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Answer: Answer: batch effects for a single sample?
2.5 years ago swbarnes2 ★ 1.4k
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925
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Answer: Answer: Getting erros from dds
2.5 years ago swbarnes2 ★ 1.4k
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1.7k
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Answer: Answer: DESeq2 comparisons with multiple experimental variables?
2.5 years ago swbarnes2 ★ 1.4k
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Answer: Answer: Time series and interaction in DESeq2
2.5 years ago swbarnes2 ★ 1.4k
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922
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Answer: Answer: Setting up read count data for DESeq2 to create a dds object
2.5 years ago swbarnes2 ★ 1.4k
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922
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Comment: Comment: Setting up read count data for DESeq2 to create a dds object
2.5 years ago swbarnes2 ★ 1.4k
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Comment: Comment: ScRNA sequencing data _Seurat_Object_DESEQ2_Analayis_DGE
2.5 years ago swbarnes2 ★ 1.4k
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Comment: Comment: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.
2.5 years ago swbarnes2 ★ 1.4k
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Comment: Comment: Replicating iDEP parameters in DESeq2; two conditions and an interaction term.
2.6 years ago swbarnes2 ★ 1.4k
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1.8k
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Answer: Answer: Understandig listValues argument of DESEQ in multiple group comparisons
2.6 years ago swbarnes2 ★ 1.4k
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1.5k
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Comment: Comment: Multi-factor paired RNAseq differential analysis with DEseq2
2.7 years ago swbarnes2 ★ 1.4k
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2
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Answer: Answer: Multi-factor paired RNAseq differential analysis with DEseq2
2.7 years ago swbarnes2 ★ 1.4k
0
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1.4k
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Comment: Comment: DE analysis model matrix for paired samples
2.7 years ago swbarnes2 ★ 1.4k
0
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1.8k
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Comment: Comment: PlotPCA in DESeq2 doesn't produce exactly the same result as prcomp
2.7 years ago swbarnes2 ★ 1.4k
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4.3k
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Comment: Comment: How to remove batch effect from RNA-seq without count data?
2.7 years ago swbarnes2 ★ 1.4k
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Comment: Comment: DESeq2 analysis for targeted RNA-seq
2.7 years ago swbarnes2 ★ 1.4k
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7.8k
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Comment: Comment: Adding sample label to PCA plot
2.7 years ago swbarnes2 ★ 1.4k
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2.8k
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Answer: Answer: Start to End RNA-Seq with R Bioconductor
2.7 years ago swbarnes2 ★ 1.4k
0
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Comment: Comment: sigh of log2FC values in DESeq2
2.8 years ago swbarnes2 ★ 1.4k
0
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1
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4.6k
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Answer: Answer: Deseq2 normalization for WGCNA
2.8 years ago swbarnes2 ★ 1.4k
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2.1k
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Answer: Answer: DESeq2 - batch, condition and tissue information
2.8 years ago swbarnes2 ★ 1.4k
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1.7k
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Answer: Answer: NA values for mitochondrial gene percentage
2.8 years ago swbarnes2 ★ 1.4k
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1
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1.4k
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Answer: Answer: Design formula in DESeq2
2.8 years ago swbarnes2 ★ 1.4k
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1
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1.1k
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Comment: Comment: DESEQ2 Results log2fold and pvalue changes after removing genes
2.8 years ago swbarnes2 ★ 1.4k
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Answer: Answer: tximport question on what counts to use for LogFC calculations
2.8 years ago swbarnes2 ★ 1.4k
0
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0
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865
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Comment: Comment: Troubleshooting DESeq2 Analysis: no DE genes found in subset
2.8 years ago swbarnes2 ★ 1.4k
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0
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793
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Answer: Answer: DESeq2: Difference between two groups of conditions
2.9 years ago swbarnes2 ★ 1.4k
1
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1.8k
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Answer: Answer: Which rlog should I use for DESeq2 analysis
2.9 years ago swbarnes2 ★ 1.4k
0
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1
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697
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Comment: Comment: Which interactions terms to choose?
2.9 years ago swbarnes2 ★ 1.4k
0
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1
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857
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Answer: Answer: Complex Contrast in DESeq2
2.9 years ago swbarnes2 ★ 1.4k
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1.2k
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Answer: Answer: DESeq2 interaction terms in 2x2x2 factorial design
2.9 years ago swbarnes2 ★ 1.4k
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0
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2.0k
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Comment: Comment: Rsamtools : Extracting Unmapped Reads from BAM file
2.9 years ago swbarnes2 ★ 1.4k
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0
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972
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Answer: Answer: DESeq2 ratio of ratios and p-value
2.9 years ago swbarnes2 ★ 1.4k
0
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3.7k
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Comment: Comment: Help with this in Rstudio - ERROR: the BAM input file, 'sample.bam', doesn't hav
2.9 years ago swbarnes2 ★ 1.4k
2
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1.8k
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Answer: Answer: Batch effect from to sequencing data at differents depths
2.9 years ago swbarnes2 ★ 1.4k
0
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923
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Answer: Answer: results() function and finding the difference of differences
2.9 years ago swbarnes2 ★ 1.4k
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1.3k
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Answer: Answer: DESeq2 PlotCounts() function
2.9 years ago swbarnes2 ★ 1.4k
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1.3k
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Comment: Comment: DESeq2 Design Matrix Two Conditions and Two Treatments
2.9 years ago swbarnes2 ★ 1.4k
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1
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1.3k
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Answer: Answer: DESeq2 Design Matrix Two Conditions and Two Treatments
2.9 years ago swbarnes2 ★ 1.4k
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0
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4.0k
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Comment: Comment: Error connecting to external databases through celldex
3.0 years ago swbarnes2 ★ 1.4k
2
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2
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4.0k
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Error connecting to external databases through celldex
celldex
3.0 years ago swbarnes2 ★ 1.4k
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1.1k
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Comment: Comment: How to convert TMM RNA-seq file (generated by edgeR) to list of differentially e
3.0 years ago swbarnes2 ★ 1.4k
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0
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1.1k
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Answer: Answer: Is it advisable to input a count matrix that consists of reads aligned using dif
3.0 years ago swbarnes2 ★ 1.4k
456 results • Page 4 of 10
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