Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
1
reply
2.1k
views
Answer: Answer: plotCounts to visualize variations of a specific genes along conditions
updated 23 months ago by 42k • written 23 months ago by ★ 1.4k
0
votes
1
reply
1.0k
views
Comment: Comment: RNA-seq analysis between a wildtype vs a double microRNA kockout mouse brain
23 months ago swbarnes2 ★ 1.4k
0
votes
0
replies
2.7k
views
Comment: Comment: t.test to determine the P-value in DESeq2
23 months ago swbarnes2 ★ 1.4k
0
votes
0
replies
1.1k
views
Answer: Answer: Design formula with batch effects DESeq2 "Not full rank matrix" error.
23 months ago swbarnes2 ★ 1.4k
0
votes
1
reply
1.2k
views
Comment: Comment: disappearing of DEGs genes by adjusting P-value < 0.05
23 months ago swbarnes2 ★ 1.4k
0
votes
1
reply
2.7k
views
Comment: Comment: t.test to determine the P-value in DESeq2
23 months ago swbarnes2 ★ 1.4k
0
votes
1
reply
2.7k
views
Comment: Comment: t.test to determine the P-value in DESeq2
23 months ago swbarnes2 ★ 1.4k
1
vote
1
reply
2.0k
views
Answer: Answer: Error in `.rowNamesDF<-`(x, value = value) : duplicate 'row.names' are not al
23 months ago swbarnes2 ★ 1.4k
0
votes
0
replies
2.3k
views
Comment: Comment: How to sort SAM file
23 months ago swbarnes2 ★ 1.4k
0
votes
1
reply
1.2k
views
Answer: Answer: disappearing of DEGs genes by adjusting P-value < 0.05
23 months ago swbarnes2 ★ 1.4k
0
votes
1
reply
1.0k
views
Comment: Comment: Running DESeq2 on viral infection without control/host data
23 months ago swbarnes2 ★ 1.4k
0
votes
1
reply
1.0k
views
Answer: Answer: Running DESeq2 on viral infection without control/host data
23 months ago swbarnes2 ★ 1.4k
0
votes
1
reply
706
views
Answer: Answer: RNA-seq DESeq2 factor design
23 months ago swbarnes2 ★ 1.4k
0
votes
1
reply
923
views
Answer: Answer: Unexpectedly low number of DE genes?
23 months ago swbarnes2 ★ 1.4k
0
votes
1
reply
990
views
Comment: Comment: I have a problem when I run DESeq2 with one variable with 8 levels, I can't find
23 months ago swbarnes2 ★ 1.4k
1
vote
1
reply
945
views
Answer: Answer: Modelling batch effect in DESeq2 - how to interpret the results?
24 months ago swbarnes2 ★ 1.4k
0
votes
0
replies
2.3k
views
Comment: Comment: How to sort SAM file
24 months ago swbarnes2 ★ 1.4k
0
votes
1
reply
2.0k
views
Answer: Answer: Comparing different method for DESEQ2
2.0 years ago swbarnes2 ★ 1.4k
0
votes
1
reply
2.0k
views
Answer: Answer: No differentially expressed genes after DESeq
2.0 years ago swbarnes2 ★ 1.4k
1
vote
0
replies
2.1k
views
Comment: Comment: Different results between Limma and DESEQ2 for Differential Expression Analysis
2.0 years ago swbarnes2 ★ 1.4k
0
votes
1
reply
2.1k
views
Comment: Comment: Different results between Limma and DESEQ2 for Differential Expression Analysis
2.0 years ago swbarnes2 ★ 1.4k
0
votes
1
reply
5.1k
views
Comment: Comment: Understanding the Log2FoldChange calculated with DESeq2 and according to formula
2.0 years ago swbarnes2 ★ 1.4k
0
votes
1
reply
5.1k
views
Answer: Answer: Understanding the Log2FoldChange calculated with DESeq2 and according to formula
2.0 years ago swbarnes2 ★ 1.4k
0
votes
0
replies
676
views
Answer: Answer: interaction term formula for DESEQ2?
2.0 years ago swbarnes2 ★ 1.4k
0
votes
0
replies
1.3k
views
Answer: Answer: Clarification about DESeq2 counts() function when dealing with covariates
2.0 years ago swbarnes2 ★ 1.4k
0
votes
1
reply
576
views
Answer: Answer: DESeq2 with incorrect adjusted Pvalues
2.1 years ago swbarnes2 ★ 1.4k
0
votes
1
reply
848
views
Answer: Answer: Overwhelmed by DESEq2 options and how to answer my questions.: Two conditions an
2.1 years ago swbarnes2 ★ 1.4k
0
votes
0
replies
518
views
Answer: Answer: ref treatment
2.1 years ago swbarnes2 ★ 1.4k
0
votes
1
reply
757
views
Answer: Answer: code syntax for DESeq2 to derive DEGs from a complicated contrast or interactio
2.1 years ago swbarnes2 ★ 1.4k
2
votes
0
replies
3.6k
views
Answer: Answer: Understanding how to contrast two treatments in DESeq2
2.1 years ago swbarnes2 ★ 1.4k
0
votes
0
replies
1.8k
views
Comment: Comment: DESeq2 contrasts using all relevant samples vs all samples
2.1 years ago swbarnes2 ★ 1.4k
0
votes
1
reply
1.3k
views
Answer: Answer: resultsNames(dds) not showing all contrasts
2.1 years ago swbarnes2 ★ 1.4k
0
votes
1
reply
1.1k
views
Answer: Answer: DESEq2 rerun gives different results
2.1 years ago swbarnes2 ★ 1.4k
0
votes
0
replies
1.1k
views
Comment: Comment: Time course RNA seq with DESeq2
2.1 years ago swbarnes2 ★ 1.4k
0
votes
0
replies
472
views
Answer: Answer: DESeq2 comparison of different sample combinations
2.1 years ago swbarnes2 ★ 1.4k
0
votes
0
replies
493
views
Answer: Answer: Batch correction in deseq2
2.1 years ago swbarnes2 ★ 1.4k
0
votes
0
replies
1.5k
views
Comment: Comment: How to get started with DeseqDataSet import using CSV? Is it necessary to have C
2.1 years ago swbarnes2 ★ 1.4k
0
votes
1
reply
1.1k
views
Answer: Answer: what should be our references when 2 samples which I compare are treated and the
2.2 years ago swbarnes2 ★ 1.4k
0
votes
0
replies
782
views
Answer: Answer: DESeq2 Interaction Term Error Occurred
2.2 years ago swbarnes2 ★ 1.4k
0
votes
0
replies
2.0k
views
Comment: Comment: DESeqDataSetFromMatrix error
2.2 years ago swbarnes2 ★ 1.4k
0
votes
1
reply
2.0k
views
Answer: Answer: DESeqDataSetFromMatrix error
2.2 years ago swbarnes2 ★ 1.4k
0
votes
0
replies
1.0k
views
Comment: Comment: DiffBind: dba.plotPCA() ellipse
2.2 years ago swbarnes2 ★ 1.4k
0
votes
1
reply
1.1k
views
Answer: Answer: Seeking help in multifactor differential gene expression analysis using DESeq2.
2.2 years ago swbarnes2 ★ 1.4k
2
votes
1
reply
3.2k
views
Comment: Comment: Using Age or other numerical variable to model expression in deseq2
2.3 years ago swbarnes2 ★ 1.4k
0
votes
0
replies
1.3k
views
Comment: Comment: I got error message about DESeqDataSetFromMatrix
2.3 years ago swbarnes2 ★ 1.4k
0
votes
1
reply
1.3k
views
Answer: Answer: I got error message about DESeqDataSetFromMatrix
2.3 years ago swbarnes2 ★ 1.4k
1
vote
1
reply
698
views
Answer: Answer: DESeq2 changing Interaction term interpretation
2.3 years ago swbarnes2 ★ 1.4k
1
vote
0
replies
2.0k
views
Answer: Answer: Log2FoldChange and normalized count values are not consistent?
2.3 years ago swbarnes2 ★ 1.4k
2
votes
0
replies
1.7k
views
Answer: Answer: Difference between raw counts and featureCounts for DESeq2
2.4 years ago swbarnes2 ★ 1.4k
1
vote
1
reply
936
views
Answer: Answer: DESeq2 paired design: Differential list comparing fold changes
2.4 years ago swbarnes2 ★ 1.4k
456 results • Page 3 of 10
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6