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Comment: Comment: Remove low-expressed genes in DESeq2?
2.1 years ago swbarnes2 ★ 1.4k
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424
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Answer: Answer: DESeq2 effect of interaction when using a grouping variable
2.2 years ago swbarnes2 ★ 1.4k
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930
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Comment: Comment: DESeq2 says my sampleinfo has linear combination error but I don't see it...
2.2 years ago swbarnes2 ★ 1.4k
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930
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Answer: Answer: DESeq2 says my sampleinfo has linear combination error but I don't see it...
2.2 years ago swbarnes2 ★ 1.4k
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1.0k
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Answer: Answer: Error in DESeqDataSetFromHTSeqCount
2.2 years ago swbarnes2 ★ 1.4k
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713
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Answer: Answer: Analysing only significant genes from differential expression analysis in a repl
2.2 years ago swbarnes2 ★ 1.4k
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1.1k
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Answer: Answer: DESeq2 correction for biological replicate variance using design
2.2 years ago swbarnes2 ★ 1.4k
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2
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1.9k
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Comment: Comment: why there are read counts in the gene knock out rat RNA-seq data
2.2 years ago swbarnes2 ★ 1.4k
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2.5k
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Answer: Answer: plotCounts to visualize variations of a specific genes along conditions
updated 2.2 years ago by 43k • written 2.2 years ago by ★ 1.4k
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Comment: Comment: RNA-seq analysis between a wildtype vs a double microRNA kockout mouse brain
2.2 years ago swbarnes2 ★ 1.4k
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3.1k
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Comment: Comment: t.test to determine the P-value in DESeq2
2.2 years ago swbarnes2 ★ 1.4k
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1.2k
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Answer: Answer: Design formula with batch effects DESeq2 "Not full rank matrix" error.
2.2 years ago swbarnes2 ★ 1.4k
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1.3k
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Comment: Comment: disappearing of DEGs genes by adjusting P-value < 0.05
2.2 years ago swbarnes2 ★ 1.4k
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1
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3.1k
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Comment: Comment: t.test to determine the P-value in DESeq2
2.2 years ago swbarnes2 ★ 1.4k
0
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1
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3.1k
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Comment: Comment: t.test to determine the P-value in DESeq2
2.2 years ago swbarnes2 ★ 1.4k
1
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2.3k
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Answer: Answer: Error in `.rowNamesDF<-`(x, value = value) : duplicate 'row.names' are not al
2.2 years ago swbarnes2 ★ 1.4k
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2.5k
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Comment: Comment: How to sort SAM file
2.2 years ago swbarnes2 ★ 1.4k
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1
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1.3k
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Answer: Answer: disappearing of DEGs genes by adjusting P-value < 0.05
2.2 years ago swbarnes2 ★ 1.4k
0
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1
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1.2k
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Comment: Comment: Running DESeq2 on viral infection without control/host data
2.3 years ago swbarnes2 ★ 1.4k
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1.2k
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Answer: Answer: Running DESeq2 on viral infection without control/host data
2.3 years ago swbarnes2 ★ 1.4k
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1
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764
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Answer: Answer: RNA-seq DESeq2 factor design
2.3 years ago swbarnes2 ★ 1.4k
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1
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1.0k
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Answer: Answer: Unexpectedly low number of DE genes?
2.3 years ago swbarnes2 ★ 1.4k
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1
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1.1k
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Comment: Comment: I have a problem when I run DESeq2 with one variable with 8 levels, I can't find
2.3 years ago swbarnes2 ★ 1.4k
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1
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1.0k
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Answer: Answer: Modelling batch effect in DESeq2 - how to interpret the results?
2.3 years ago swbarnes2 ★ 1.4k
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2.5k
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Comment: Comment: How to sort SAM file
2.3 years ago swbarnes2 ★ 1.4k
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1
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2.2k
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Answer: Answer: Comparing different method for DESEQ2
2.3 years ago swbarnes2 ★ 1.4k
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1
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2.3k
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Answer: Answer: No differentially expressed genes after DESeq
2.3 years ago swbarnes2 ★ 1.4k
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2.3k
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Comment: Comment: Different results between Limma and DESEQ2 for Differential Expression Analysis
2.3 years ago swbarnes2 ★ 1.4k
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1
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2.3k
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Comment: Comment: Different results between Limma and DESEQ2 for Differential Expression Analysis
2.3 years ago swbarnes2 ★ 1.4k
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1
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5.8k
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Comment: Comment: Understanding the Log2FoldChange calculated with DESeq2 and according to formula
2.3 years ago swbarnes2 ★ 1.4k
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1
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5.8k
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Answer: Answer: Understanding the Log2FoldChange calculated with DESeq2 and according to formula
2.3 years ago swbarnes2 ★ 1.4k
0
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0
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745
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Answer: Answer: interaction term formula for DESEQ2?
2.3 years ago swbarnes2 ★ 1.4k
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0
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1.5k
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Answer: Answer: Clarification about DESeq2 counts() function when dealing with covariates
2.4 years ago swbarnes2 ★ 1.4k
0
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1
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614
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Answer: Answer: DESeq2 with incorrect adjusted Pvalues
2.4 years ago swbarnes2 ★ 1.4k
0
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1
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918
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Answer: Answer: Overwhelmed by DESEq2 options and how to answer my questions.: Two conditions an
2.4 years ago swbarnes2 ★ 1.4k
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0
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567
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Answer: Answer: ref treatment
2.4 years ago swbarnes2 ★ 1.4k
0
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1
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839
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Answer: Answer: code syntax for DESeq2 to derive DEGs from a complicated contrast or interactio
2.4 years ago swbarnes2 ★ 1.4k
2
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0
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4.4k
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Answer: Answer: Understanding how to contrast two treatments in DESeq2
2.4 years ago swbarnes2 ★ 1.4k
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0
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2.0k
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Comment: Comment: DESeq2 contrasts using all relevant samples vs all samples
2.4 years ago swbarnes2 ★ 1.4k
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1
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1.4k
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Answer: Answer: resultsNames(dds) not showing all contrasts
2.4 years ago swbarnes2 ★ 1.4k
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1
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1.4k
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Answer: Answer: DESEq2 rerun gives different results
2.4 years ago swbarnes2 ★ 1.4k
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0
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1.2k
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Comment: Comment: Time course RNA seq with DESeq2
2.4 years ago swbarnes2 ★ 1.4k
0
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0
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504
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Answer: Answer: DESeq2 comparison of different sample combinations
2.4 years ago swbarnes2 ★ 1.4k
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0
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550
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Answer: Answer: Batch correction in deseq2
2.4 years ago swbarnes2 ★ 1.4k
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0
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1.7k
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Comment: Comment: How to get started with DeseqDataSet import using CSV? Is it necessary to have C
2.5 years ago swbarnes2 ★ 1.4k
0
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1
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1.2k
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Answer: Answer: what should be our references when 2 samples which I compare are treated and the
2.5 years ago swbarnes2 ★ 1.4k
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0
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831
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Answer: Answer: DESeq2 Interaction Term Error Occurred
2.5 years ago swbarnes2 ★ 1.4k
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0
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2.3k
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Comment: Comment: DESeqDataSetFromMatrix error
2.5 years ago swbarnes2 ★ 1.4k
0
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1
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2.3k
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Answer: Answer: DESeqDataSetFromMatrix error
2.5 years ago swbarnes2 ★ 1.4k
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0
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1.1k
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Comment: Comment: DiffBind: dba.plotPCA() ellipse
2.5 years ago swbarnes2 ★ 1.4k
464 results • Page 3 of 10
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