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Answer: Answer: How to properly compare the group-specific samples using DEseq2
16 months ago swbarnes2 ★ 1.4k
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Comment: Comment: How to use contrast with multiple treatments?
16 months ago swbarnes2 ★ 1.4k
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Comment: Comment: Handle zero effective gene length when tximport RSEM results
17 months ago swbarnes2 ★ 1.4k
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Comment: Comment: PCA percent variance DESeq2
17 months ago swbarnes2 ★ 1.4k
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1.0k
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Answer: Answer: DESeq2 batch design
17 months ago swbarnes2 ★ 1.4k
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1.5k
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Answer: Answer: Handle zero effective gene length when tximport RSEM results
17 months ago swbarnes2 ★ 1.4k
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2.4k
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Comment: Comment: PCA percent variance DESeq2
17 months ago swbarnes2 ★ 1.4k
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1.7k
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Comment: Comment: Question about RNAseq analysis in EdgeR to identify common and donor specific di
18 months ago swbarnes2 ★ 1.4k
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1.7k
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Answer: Answer: Question about RNAseq analysis in EdgeR to identify common and donor specific di
18 months ago swbarnes2 ★ 1.4k
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1.4k
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Comment: Comment: DESeq2 design formula
18 months ago swbarnes2 ★ 1.4k
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1.1k
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Comment: Comment: DESeq2 on multilevel design variable
19 months ago swbarnes2 ★ 1.4k
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1.3k
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Comment: Comment: Error: biomaRt has encountered an unexpected server error.
20 months ago swbarnes2 ★ 1.4k
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803
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Answer: Answer: DESeq2 about comparasion of gene expression change on two-time points between t
20 months ago swbarnes2 ★ 1.4k
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Comment: Comment: Subsetting DESeq data set to compare treatments within one group (multi-group ex
20 months ago swbarnes2 ★ 1.4k
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818
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Answer: Answer: Accounting for technical replicates in DESeq2
20 months ago swbarnes2 ★ 1.4k
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742
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Answer: Answer: DESeq2 design formula
21 months ago swbarnes2 ★ 1.4k
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Answer: Answer: Combine RNA-seq
21 months ago swbarnes2 ★ 1.4k
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954
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Answer: Answer: How to import dataset from other software into DESeq2?
21 months ago swbarnes2 ★ 1.4k
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593
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Answer: Answer: DESeq2 statistical model construction
21 months ago swbarnes2 ★ 1.4k
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941
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Answer: Answer: Compare and filter three BAM files
22 months ago swbarnes2 ★ 1.4k
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720
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Comment: Comment: DESeq2 with temporal data and different treatments
22 months ago swbarnes2 ★ 1.4k
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1.1k
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Comment: Comment: How do I design my DESEQ experiment?
22 months ago swbarnes2 ★ 1.4k
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Answer: Answer: How do I design my DESEQ experiment?
23 months ago swbarnes2 ★ 1.4k
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Answer: Answer: DESeq2 analysis on Galaxy. PCA plot shows my replicates do not cluster and large
23 months ago swbarnes2 ★ 1.4k
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856
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Answer: Answer: RNAseq high padj value from validated samples?
23 months ago swbarnes2 ★ 1.4k
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2.4k
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Answer: Answer: 10x BAM to count matrix in Rsubread and Rsamtools- cellCounts vs. featureCounts
23 months ago swbarnes2 ★ 1.4k
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3.2k
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Answer: Answer: DESeq2 and heatmap for multiple comparisons
23 months ago swbarnes2 ★ 1.4k
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864
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Answer: Answer: DEG analysis with Paired-end RNA-seq data using DESeq2, do I need to contain the
24 months ago swbarnes2 ★ 1.4k
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1.3k
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Comment: Comment: Error running DESeq2 on longitudinal data: Error in checkFullRank(modelMatrix)
2.0 years ago swbarnes2 ★ 1.4k
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1.3k
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Comment: Comment: Error running DESeq2 on longitudinal data: Error in checkFullRank(modelMatrix)
2.0 years ago swbarnes2 ★ 1.4k
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1.3k
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Answer: Answer: Error running DESeq2 on longitudinal data: Error in checkFullRank(modelMatrix)
2.0 years ago swbarnes2 ★ 1.4k
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Comment: Comment: Gene TPM validity with STAR only quantification
2.1 years ago swbarnes2 ★ 1.4k
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1.2k
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Answer: Answer: DESeq2: overlap differentially expressed genes with and without interaction term
2.1 years ago swbarnes2 ★ 1.4k
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1.7k
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Answer: Answer: running DESeq2 from nanopore wf-alignment workflow
2.1 years ago swbarnes2 ★ 1.4k
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1.0k
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Answer: Answer: Results analysis of differential gene expression using DESeq2 package
2.1 years ago swbarnes2 ★ 1.4k
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936
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Comment: Comment: what could be the source of this erro
2.1 years ago swbarnes2 ★ 1.4k
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936
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Comment: Comment: what could be the source of this erro
2.1 years ago swbarnes2 ★ 1.4k
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1
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1.0k
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Answer: Answer: How to filter for counts in different columns
2.1 years ago swbarnes2 ★ 1.4k
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673
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Comment: Comment: checkFullRank(modelMatrix) while neither factor can be predicted from each other
2.1 years ago swbarnes2 ★ 1.4k
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1.2k
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Comment: Comment: Rlog performed on tpm or raw transcript abundances?
2.1 years ago swbarnes2 ★ 1.4k
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Comment: Comment: FeatureCounts: Low assigned reads, can I proceed? Do I need to do another pre-pr
2.1 years ago swbarnes2 ★ 1.4k
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2.7k
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Comment: Comment: countToFPKM and featureLength
2.1 years ago swbarnes2 ★ 1.4k
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2.7k
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Comment: Comment: countToFPKM and featureLength
2.1 years ago swbarnes2 ★ 1.4k
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2.7k
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Comment: Comment: countToFPKM and featureLength
2.1 years ago swbarnes2 ★ 1.4k
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1
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834
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Answer: Answer: DESeq2 on multiple sample groups
2.1 years ago swbarnes2 ★ 1.4k
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2.7k
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Comment: Comment: countToFPKM and featureLength
2.1 years ago swbarnes2 ★ 1.4k
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2.8k
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Answer: Answer: Is it possible to convert "DESeq2's normalized counts" to "DEGs"?
2.1 years ago swbarnes2 ★ 1.4k
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2.8k
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Comment: Comment: Is it possible to convert "DESeq2's normalized counts" to "DEGs"?
2.1 years ago swbarnes2 ★ 1.4k
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2.7k
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Answer: Answer: countToFPKM and featureLength
2.1 years ago swbarnes2 ★ 1.4k
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1
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2.0k
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Answer: Answer: DESeq2 false positive result?
2.1 years ago swbarnes2 ★ 1.4k
464 results • Page 2 of 10
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