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Answer: Answer: Question about RNAseq analysis in EdgeR to identify common and donor specific di
14 months ago swbarnes2 ★ 1.4k
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Comment: Comment: DESeq2 design formula
15 months ago swbarnes2 ★ 1.4k
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892
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Comment: Comment: DESeq2 on multilevel design variable
16 months ago swbarnes2 ★ 1.4k
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Comment: Comment: Error: biomaRt has encountered an unexpected server error.
16 months ago swbarnes2 ★ 1.4k
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729
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Answer: Answer: DESeq2 about comparasion of gene expression change on two-time points between t
16 months ago swbarnes2 ★ 1.4k
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1.2k
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Comment: Comment: Subsetting DESeq data set to compare treatments within one group (multi-group ex
16 months ago swbarnes2 ★ 1.4k
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699
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Answer: Answer: Accounting for technical replicates in DESeq2
16 months ago swbarnes2 ★ 1.4k
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651
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Answer: Answer: DESeq2 design formula
17 months ago swbarnes2 ★ 1.4k
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1.2k
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Answer: Answer: Combine RNA-seq
17 months ago swbarnes2 ★ 1.4k
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868
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Answer: Answer: How to import dataset from other software into DESeq2?
18 months ago swbarnes2 ★ 1.4k
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528
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Answer: Answer: DESeq2 statistical model construction
18 months ago swbarnes2 ★ 1.4k
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833
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Answer: Answer: Compare and filter three BAM files
18 months ago swbarnes2 ★ 1.4k
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658
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Comment: Comment: DESeq2 with temporal data and different treatments
18 months ago swbarnes2 ★ 1.4k
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980
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Comment: Comment: How do I design my DESEQ experiment?
19 months ago swbarnes2 ★ 1.4k
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980
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Answer: Answer: How do I design my DESEQ experiment?
19 months ago swbarnes2 ★ 1.4k
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1.1k
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Answer: Answer: DESeq2 analysis on Galaxy. PCA plot shows my replicates do not cluster and large
19 months ago swbarnes2 ★ 1.4k
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793
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Answer: Answer: RNAseq high padj value from validated samples?
19 months ago swbarnes2 ★ 1.4k
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2.0k
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Answer: Answer: 10x BAM to count matrix in Rsubread and Rsamtools- cellCounts vs. featureCounts
19 months ago swbarnes2 ★ 1.4k
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2.8k
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Answer: Answer: DESeq2 and heatmap for multiple comparisons
19 months ago swbarnes2 ★ 1.4k
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770
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Answer: Answer: DEG analysis with Paired-end RNA-seq data using DESeq2, do I need to contain the
20 months ago swbarnes2 ★ 1.4k
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1.2k
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Comment: Comment: Error running DESeq2 on longitudinal data: Error in checkFullRank(modelMatrix)
20 months ago swbarnes2 ★ 1.4k
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1.2k
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Comment: Comment: Error running DESeq2 on longitudinal data: Error in checkFullRank(modelMatrix)
20 months ago swbarnes2 ★ 1.4k
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1
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1.2k
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Answer: Answer: Error running DESeq2 on longitudinal data: Error in checkFullRank(modelMatrix)
20 months ago swbarnes2 ★ 1.4k
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1.0k
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Comment: Comment: Gene TPM validity with STAR only quantification
21 months ago swbarnes2 ★ 1.4k
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1.1k
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Answer: Answer: DESeq2: overlap differentially expressed genes with and without interaction term
21 months ago swbarnes2 ★ 1.4k
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1.4k
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Answer: Answer: running DESeq2 from nanopore wf-alignment workflow
21 months ago swbarnes2 ★ 1.4k
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884
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Answer: Answer: Results analysis of differential gene expression using DESeq2 package
21 months ago swbarnes2 ★ 1.4k
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867
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Comment: Comment: what could be the source of this erro
21 months ago swbarnes2 ★ 1.4k
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867
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Comment: Comment: what could be the source of this erro
21 months ago swbarnes2 ★ 1.4k
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1
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918
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Answer: Answer: How to filter for counts in different columns
21 months ago swbarnes2 ★ 1.4k
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614
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Comment: Comment: checkFullRank(modelMatrix) while neither factor can be predicted from each other
22 months ago swbarnes2 ★ 1.4k
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1.1k
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Comment: Comment: Rlog performed on tpm or raw transcript abundances?
22 months ago swbarnes2 ★ 1.4k
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2.6k
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Comment: Comment: FeatureCounts: Low assigned reads, can I proceed? Do I need to do another pre-pr
22 months ago swbarnes2 ★ 1.4k
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2.5k
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Comment: Comment: countToFPKM and featureLength
22 months ago swbarnes2 ★ 1.4k
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2.5k
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Comment: Comment: countToFPKM and featureLength
22 months ago swbarnes2 ★ 1.4k
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2.5k
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Comment: Comment: countToFPKM and featureLength
22 months ago swbarnes2 ★ 1.4k
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748
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Answer: Answer: DESeq2 on multiple sample groups
22 months ago swbarnes2 ★ 1.4k
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2.5k
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Comment: Comment: countToFPKM and featureLength
22 months ago swbarnes2 ★ 1.4k
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2.4k
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Answer: Answer: Is it possible to convert "DESeq2's normalized counts" to "DEGs"?
22 months ago swbarnes2 ★ 1.4k
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2.4k
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Comment: Comment: Is it possible to convert "DESeq2's normalized counts" to "DEGs"?
22 months ago swbarnes2 ★ 1.4k
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2.5k
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Answer: Answer: countToFPKM and featureLength
22 months ago swbarnes2 ★ 1.4k
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1.8k
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Answer: Answer: DESeq2 false positive result?
22 months ago swbarnes2 ★ 1.4k
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0
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991
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Comment: Comment: Remove low-expressed genes in DESeq2?
22 months ago swbarnes2 ★ 1.4k
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380
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Answer: Answer: DESeq2 effect of interaction when using a grouping variable
22 months ago swbarnes2 ★ 1.4k
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850
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Comment: Comment: DESeq2 says my sampleinfo has linear combination error but I don't see it...
22 months ago swbarnes2 ★ 1.4k
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850
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Answer: Answer: DESeq2 says my sampleinfo has linear combination error but I don't see it...
22 months ago swbarnes2 ★ 1.4k
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0
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922
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Answer: Answer: Error in DESeqDataSetFromHTSeqCount
22 months ago swbarnes2 ★ 1.4k
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0
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654
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Answer: Answer: Analysing only significant genes from differential expression analysis in a repl
22 months ago swbarnes2 ★ 1.4k
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1
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899
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Answer: Answer: DESeq2 correction for biological replicate variance using design
22 months ago swbarnes2 ★ 1.4k
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2
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1.7k
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Comment: Comment: why there are read counts in the gene knock out rat RNA-seq data
23 months ago swbarnes2 ★ 1.4k
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